Literature DB >> 17714803

Histone modifications in Trypanosoma brucei.

Veena Mandava1, Joseph P Fernandez, Haiteng Deng, Christian J Janzen, Sandra B Hake, George A M Cross.   

Abstract

Several biological processes in Trypanosoma brucei are affected by chromatin structure, including gene expression, cell cycle regulation, and life-cycle stage differentiation. In Saccharomyces cerevisiae and other organisms, chromatin structure is dependent upon posttranslational modifications of histones, which have been mapped in detail. The tails of the four core histones of T. brucei are highly diverged from those of mammals and yeasts, so sites of potential modification cannot be reliably inferred, and no cross-species antibodies are available to map the modifications. We therefore undertook an extensive survey to identify posttranslational modifications by Edman degradation and mass spectrometry. Edman analysis showed that the N-terminal alanine of H2A, H2B, and H4 could be monomethylated. We found that the histone H4 N-terminus is heavily modified, while, in contrast to other organisms, the histone H2A and H2B N-termini have relatively few modifications. Histone H3 appears to have a number of modifications at the N-terminus, but we were unable to assign many of these to a specific amino acid. Therefore, we focused our efforts on uncovering modification states of H4. We discuss the potential relevance of these modifications.

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Year:  2007        PMID: 17714803      PMCID: PMC2012948          DOI: 10.1016/j.molbiopara.2007.07.005

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  30 in total

1.  A chromosomal SIR2 homologue with both histone NAD-dependent ADP-ribosyltransferase and deacetylase activities is involved in DNA repair in Trypanosoma brucei.

Authors:  José A García-Salcedo; Purificación Gijón; Derek P Nolan; Patricia Tebabi; Etienne Pays
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

2.  Histone H4 hyperacetylation precludes histone H4 lysine 20 trimethylation.

Authors:  Bettina Sarg; Wilfried Helliger; Heribert Talasz; Elisavet Koutzamani; Herbert H Lindner
Journal:  J Biol Chem       Date:  2004-09-28       Impact factor: 5.157

Review 3.  Histone acetylation in chromatin structure and transcription.

Authors:  M Grunstein
Journal:  Nature       Date:  1997-09-25       Impact factor: 49.962

4.  Continuous cultivation of Trypanosoma brucei blood stream forms in a medium containing a low concentration of serum protein without feeder cell layers.

Authors:  H Hirumi; K Hirumi
Journal:  J Parasitol       Date:  1989-12       Impact factor: 1.276

5.  Influence of ions on cyclization of the amino terminal glutamine residues of tryptic peptides of streptococcal PepM49 protein. Resolution of cyclized peptides by HPLC and characterization by mass spectrometry.

Authors:  K M Khandke; T Fairwell; B T Chait; B N Manjula
Journal:  Int J Pept Protein Res       Date:  1989-08

6.  A developmentally regulated position effect at a telomeric locus in Trypanosoma brucei.

Authors:  D Horn; G A Cross
Journal:  Cell       Date:  1995-11-17       Impact factor: 41.582

7.  Histone 2B can be modified by the attachment of ubiquitin.

Authors:  M H West; W M Bonner
Journal:  Nucleic Acids Res       Date:  1980-10-24       Impact factor: 16.971

8.  The expression-linked copy of a surface antigen gene in Trypanosoma is probably the one transcribed.

Authors:  E Pays; M Lheureux; M Steinert
Journal:  Nature       Date:  1981-07-16       Impact factor: 49.962

9.  Position-dependent and promoter-specific regulation of gene expression in Trypanosoma brucei.

Authors:  D Horn; G A Cross
Journal:  EMBO J       Date:  1997-12-15       Impact factor: 11.598

10.  Histone ubiquitination and chromatin remodeling in mouse spermatogenesis.

Authors:  W M Baarends; J W Hoogerbrugge; H P Roest; M Ooms; J Vreeburg; J H Hoeijmakers; J A Grootegoed
Journal:  Dev Biol       Date:  1999-03-15       Impact factor: 3.582

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  42 in total

1.  Drawbacks in the use of unconventional hydrophobic anhydrides for histone derivatization in bottom-up proteomics PTM analysis.

Authors:  Simone Sidoli; Zuo-Fei Yuan; Shu Lin; Kelly Karch; Xiaoshi Wang; Natarajan Bhanu; Anna M Arnaudo; Laura-Mae Britton; Xing-Jun Cao; Michelle Gonzales-Cope; Yumiao Han; Shichong Liu; Rosalynn C Molden; Samuel Wein; Leila Afjehi-Sadat; Benjamin A Garcia
Journal:  Proteomics       Date:  2015-05       Impact factor: 3.984

Review 2.  Epigenetic regulation in African trypanosomes: a new kid on the block.

Authors:  Luisa M Figueiredo; George A M Cross; Christian J Janzen
Journal:  Nat Rev Microbiol       Date:  2009-07       Impact factor: 60.633

3.  Nucleosomes are depleted at the VSG expression site transcribed by RNA polymerase I in African trypanosomes.

Authors:  Luisa M Figueiredo; George A M Cross
Journal:  Eukaryot Cell       Date:  2009-11-13

Review 4.  Protein arginine methylation in parasitic protozoa.

Authors:  John C Fisk; Laurie K Read
Journal:  Eukaryot Cell       Date:  2011-06-17

5.  Histone H3 trimethylated at lysine 4 is enriched at probable transcription start sites in Trypanosoma brucei.

Authors:  Jessica R Wright; T Nicolai Siegel; George A M Cross
Journal:  Mol Biochem Parasitol       Date:  2010-03-27       Impact factor: 1.759

Review 6.  Regulation of gene expression in protozoa parasites.

Authors:  Consuelo Gomez; M Esther Ramirez; Mercedes Calixto-Galvez; Olivia Medel; Mario A Rodríguez
Journal:  J Biomed Biotechnol       Date:  2010-03-02

Review 7.  Quantitative proteomic analysis of histone modifications.

Authors:  He Huang; Shu Lin; Benjamin A Garcia; Yingming Zhao
Journal:  Chem Rev       Date:  2015-02-17       Impact factor: 60.622

Review 8.  Bromodomains in Protozoan Parasites: Evolution, Function, and Opportunities for Drug Development.

Authors:  Victoria Jeffers; Chunlin Yang; Sherri Huang; William J Sullivan
Journal:  Microbiol Mol Biol Rev       Date:  2017-01-11       Impact factor: 11.056

9.  Stable-isotope-labeled histone peptide library for histone post-translational modification and variant quantification by mass spectrometry.

Authors:  Shu Lin; Samuel Wein; Michelle Gonzales-Cope; Gabriel L Otte; Zuo-Fei Yuan; Leila Afjehi-Sadat; Tobias Maile; Shelley L Berger; John Rush; Jennie R Lill; David Arnott; Benjamin A Garcia
Journal:  Mol Cell Proteomics       Date:  2014-07-07       Impact factor: 5.911

Review 10.  Gene expression in trypanosomatid parasites.

Authors:  Santiago Martínez-Calvillo; Juan C Vizuet-de-Rueda; Luis E Florencio-Martínez; Rebeca G Manning-Cela; Elisa E Figueroa-Angulo
Journal:  J Biomed Biotechnol       Date:  2010-02-11
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