Literature DB >> 17705786

A stress-induced rice (Oryza sativa L.) beta-glucosidase represents a new subfamily of glycosyl hydrolase family 5 containing a fascin-like domain.

Rodjana Opassiri1, Busarakum Pomthong, Takashi Akiyama, Massalin Nakphaichit, Tassanee Onkoksoong, Mariena Ketudat Cairns, James R Ketudat Cairns.   

Abstract

GH5BG, the cDNA for a stress-induced GH5 (glycosyl hydrolase family 5) beta-glucosidase, was cloned from rice (Oryza sativa L.) seedlings. The GH5BG cDNA encodes a 510-amino-acid precursor protein that comprises 19 amino acids of prepeptide and 491 amino acids of mature protein. The protein was predicted to be extracellular. The mature protein is a member of a plant-specific subgroup of the GH5 exoglucanase subfamily that contains two major domains, a beta-1,3-exoglucanase-like domain and a fascin-like domain that is not commonly found in plant enzymes. The GH5BG mRNA is highly expressed in the shoot during germination and in leaf sheaths of mature plants. The GH5BG was up-regulated in response to salt stress, submergence stress, methyl jasmonate and abscisic acid in rice seedlings. A GUS (glucuronidase) reporter tagged at the C-terminus of GH5BG was found to be secreted to the apoplast when expressed in onion (Allium cepa) cells. A thioredoxin fusion protein produced from the GH5BG cDNA in Escherichia coli hydrolysed various pNP (p-nitrophenyl) glycosides, including beta-D-glucoside, alpha-L-arabinoside, beta-D-fucoside, beta-D-galactoside, beta-D-xyloside and beta-D-cellobioside, as well as beta-(1,4)-linked glucose oligosaccharides and beta-(1,3)-linked disaccharide (laminaribiose). The catalytic efficiency (kcat/K(m)) for hydrolysis of beta-(1,4)-linked oligosaccharides by the enzyme remained constant as the DP (degree of polymerization) increased from 3 to 5. This substrate specificity is significantly different from fungal GH5 exoglucanases, such as the exo-beta-(1,3)-glucanase of the yeast Candida albicans, which may correlate with a marked reduction in a loop that makes up the active-site wall in the Candida enzyme.

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Year:  2007        PMID: 17705786      PMCID: PMC2267349          DOI: 10.1042/BJ20070734

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  44 in total

1.  Crystallization and preliminary X-ray analysis of the major endoglucanase from Thermoascus aurantiacus.

Authors:  L Lo Leggio; N J Parry; J Van Beeumen; M Claeyssens; M K Bhat; R W Pickersgill
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-09-01

2.  Glucosidases and exo-glucanases.

Authors:  E T Reese; A H Maguire; F W Parrish
Journal:  Can J Biochem       Date:  1968-01

3.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

4.  Beta-glucosidase, beta-galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes with 8-fold beta/alpha architecture and with two conserved glutamates near the carboxy-terminal ends of beta-strands four and seven.

Authors:  J Jenkins; L Lo Leggio; G Harris; R Pickersgill
Journal:  FEBS Lett       Date:  1995-04-10       Impact factor: 4.124

5.  Identification of a putative active site residue in the exo-beta-(1,3)-glucanase of Candida albicans.

Authors:  R S Chambers; A R Walden; G S Brooke; J F Cutfield; P A Sullivan
Journal:  FEBS Lett       Date:  1993-08-02       Impact factor: 4.124

6.  Structural and mechanistic analyses of endo-glycoceramidase II, a membrane-associated family 5 glycosidase in the Apo and GM3 ganglioside-bound forms.

Authors:  Matthew E C Caines; Mark D Vaughan; Chris A Tarling; Susan M Hancock; R Antony J Warren; Stephen G Withers; Natalie C J Strynadka
Journal:  J Biol Chem       Date:  2007-02-28       Impact factor: 5.157

7.  A symbiont-independent endo-1,4-beta-xylanase from the plant-parasitic nematode Meloidogyne incognita.

Authors:  Makedonka Mitreva-Dautova; Erwin Roze; Hein Overmars; Leo de Graaff; Arjen Schots; Johannes Helder; Aska Goverse; Jaap Bakker; Geert Smant
Journal:  Mol Plant Microbe Interact       Date:  2006-05       Impact factor: 4.171

Review 8.  Roles of fascin in cell adhesion and motility.

Authors:  Josephine C Adams
Journal:  Curr Opin Cell Biol       Date:  2004-10       Impact factor: 8.382

9.  Common inhibition of both beta-glucosidases and beta-mannosidases by isofagomine lactam reflects different conformational itineraries for pyranoside hydrolysis.

Authors:  Florence Vincent; Tracey M Gloster; James Macdonald; Carl Morland; Robert V Stick; Fernando M V Dias; José A M Prates; Carlos M G A Fontes; Harry J Gilbert; Gideon J Davies
Journal:  Chembiochem       Date:  2004-11-05       Impact factor: 3.164

10.  Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase.

Authors:  Rodjana Opassiri; Busarakum Pomthong; Tassanee Onkoksoong; Takashi Akiyama; Asim Esen; James R Ketudat Cairns
Journal:  BMC Plant Biol       Date:  2006-12-29       Impact factor: 4.215

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  16 in total

1.  Functional Analysis of a Novel β-(1,3)-Glucanase from Corallococcus sp. Strain EGB Containing a Fascin-Like Module.

Authors:  Jie Zhou; Zhoukun Li; Jiale Wu; Lifeng Li; Ding Li; Xianfeng Ye; Xue Luo; Yan Huang; Zhongli Cui; Hui Cao
Journal:  Appl Environ Microbiol       Date:  2017-08-01       Impact factor: 4.792

2.  Expression, purification, crystallization and preliminary X-ray analysis of rice (Oryza sativa L.) Os4BGlu12 beta-glucosidase.

Authors:  Sompong Sansenya; James R Ketudat Cairns; Rodjana Opassiri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-25

3.  Identification of charcoal rot resistance QTLs in sorghum using association and in silico analyses.

Authors:  Amer F Mahmoud; Salah Fatouh Abou-Elwafa; Tariq Shehzad
Journal:  J Appl Genet       Date:  2018-06-07       Impact factor: 3.240

Review 4.  β-Glucosidases.

Authors:  James R Ketudat Cairns; Asim Esen
Journal:  Cell Mol Life Sci       Date:  2010-05-20       Impact factor: 9.261

5.  Cloning, molecular characterization, and mRNA expression of the thermostable family 3 β-glucosidase from the rare fungus Stachybotrys microspora.

Authors:  Salma Abdeljalil; Héla Trigui-Lahiani; Houcine Lazzez; Ali Gargouri
Journal:  Mol Biotechnol       Date:  2013-07       Impact factor: 2.695

6.  Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family.

Authors:  Brad W Porter; Maya Paidi; Ray Ming; Maqsudul Alam; Wayne T Nishijima; Yun J Zhu
Journal:  Mol Genet Genomics       Date:  2009-03-05       Impact factor: 3.291

7.  Overexpression of SbAP37 in rice alleviates concurrent imposition of combination stresses and modulates different sets of leaf protein profiles.

Authors:  Maheshwari Parveda; B Kiran; D L Punita; P B Kavi Kishor
Journal:  Plant Cell Rep       Date:  2017-04-09       Impact factor: 4.570

8.  Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5).

Authors:  Henrik Aspeborg; Pedro M Coutinho; Yang Wang; Harry Brumer; Bernard Henrissat
Journal:  BMC Evol Biol       Date:  2012-09-20       Impact factor: 3.260

9.  Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon.

Authors:  Ludmila Tyler; Jennifer N Bragg; Jiajie Wu; Xiaohan Yang; Gerald A Tuskan; John P Vogel
Journal:  BMC Genomics       Date:  2010-10-25       Impact factor: 3.969

10.  Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns.

Authors:  Kanako Kawaura; Keiichi Mochida; Akiko Enju; Yasushi Totoki; Atsushi Toyoda; Yoshiyuki Sakaki; Chikatoshi Kai; Jun Kawai; Yoshihide Hayashizaki; Motoaki Seki; Kazuo Shinozaki; Yasunari Ogihara
Journal:  BMC Genomics       Date:  2009-06-18       Impact factor: 3.969

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