Literature DB >> 28621540

Accurate Prediction of the Hydration Free Energies of 20 Salts through Adaptive Force Matching and the Proper Comparison with Experimental References.

Jicun Li1, Feng Wang1.   

Abstract

Simple pairwise potentials for five alkali ions and four halide ions were developed by only fitting to ab initio MP2 forces with the adaptive force matching (AFM) method. Without fitting to any experimental information, the AFM models predict the hydration free energies of all 10 fluoride and chloride salts formed by these ions within 1.5% of experimental references. The predicted hydration free energies for the 10 bromide and iodide salts are within 5-6% of experimental references with the larger error likely due to the neglect of explicit treatment of polarization and charge transfer. An inconsistency in the treatment of the gas phase entropy term between experimental and theoretical approaches is discussed. A new simplified hydration free energy for the ions is reported for use as a more appropriate experimental reference for further theoretical studies. The simulations show different dipole alignments for the hydration waters of cations and anions. While hydration waters of small cations tend to align their molecular dipole toward the ion, the dipole of one of the water OH bonds is aligned with the field of an anion.

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Year:  2017        PMID: 28621540      PMCID: PMC5665695          DOI: 10.1021/acs.jpcb.7b04618

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  33 in total

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4.  A Simple Theory for the Hofmeister Series.

Authors:  Wen Jun Xie; Yi Qin Gao
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Review 5.  Recent advances in molecular simulations of ion solvation at liquid interfaces.

Authors:  Tsun-Mei Chang; Liem X Dang
Journal:  Chem Rev       Date:  2006-04       Impact factor: 60.622

6.  Ion mixing, hydration, and transport in aqueous ionic systems.

Authors:  Ying-Lung Steve Tse; Gregory A Voth; Thomas A Witten
Journal:  J Chem Phys       Date:  2015-05-14       Impact factor: 3.488

7.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

8.  On the spectroscopic and thermochemical properties of ClO, BrO, IO, and their anions.

Authors:  Kirk A Peterson; Benjamin C Shepler; Detlev Figgen; Hermann Stoll
Journal:  J Phys Chem A       Date:  2006-12-28       Impact factor: 2.781

9.  Accurate Calculation of Hydration Free Energies using Pair-Specific Lennard-Jones Parameters in the CHARMM Drude Polarizable Force Field.

Authors:  Christopher M Baker; Pedro E M Lopes; Xiao Zhu; Benoît Roux; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2010-03-01       Impact factor: 6.006

10.  Force fields for divalent cations based on single-ion and ion-pair properties.

Authors:  Shavkat Mamatkulov; Maria Fyta; Roland R Netz
Journal:  J Chem Phys       Date:  2013-01-14       Impact factor: 3.488

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  5 in total

1.  Surface Penetration without Enrichment: Simulations Show Ion Surface Propensities Consistent with Both Elevated Surface Tension and Surface Sensitive Spectroscopy.

Authors:  Jicun Li; Feng Wang
Journal:  J Phys Chem B       Date:  2019-08-13       Impact factor: 2.991

2.  Comparing Alchemical Free Energy Estimates to Experimental Values Based on the Ben-Naim Formula: How Much Agreement Can We Expect?

Authors:  T Ryan Rogers; Feng Wang
Journal:  J Phys Chem B       Date:  2020-01-23       Impact factor: 2.991

3.  Leveraging local MP2 to reduce basis set superposition errors: An efficient first-principles based force-field for carbon dioxide.

Authors:  Ying Yuan; Zhonghua Ma; Feng Wang
Journal:  J Chem Phys       Date:  2019-11-14       Impact factor: 3.488

4.  Development and Validation of a DFT-Based Force Field for a Hydrated Homoalanine Polypeptide.

Authors:  Ying Yuan; Zhonghua Ma; Feng Wang
Journal:  J Phys Chem B       Date:  2021-02-08       Impact factor: 2.991

5.  Performing Molecular Dynamics Simulations and Computing Hydration Free Energies on the B3LYP-D3(BJ) Potential Energy Surface with Adaptive Force Matching: A Benchmark Study with Seven Alcohols and One Amine.

Authors:  Dong Zheng; Feng Wang
Journal:  ACS Phys Chem Au       Date:  2021-07-21
  5 in total

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