Literature DB >> 17668294

Structural genomics as an approach towards understanding the biology of tuberculosis.

Edward N Baker1.   

Abstract

Tuberculosis (TB) is a devastating disease of worldwide importance. The availability of the genome sequence of Mycobacterium tuberculosis (Mtb), the causative agent, has stimulated a large variety of genome-scale initiatives. These include international structural genomics efforts which have the dual aim of characterising potential new drug targets and addressing key aspects of the biology of Mtb. This review highlights the various ways in which structural analysis has illuminated the biological activities of Mtb gene products, which were previously of unknown or uncertain function. Key information comes from the protein fold, from bound ligands, solvent molecules, ions etc. or from unexpectedly modified amino acid residues. Most importantly, the three dimensional structure of a protein permits the integration of data from many sources, both bioinformatic and experimental, to develop testable functional hypotheses. This has led to many new insights into TB biology.

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Year:  2007        PMID: 17668294     DOI: 10.1007/s10969-007-9020-9

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  48 in total

1.  Four-helical-bundle structure of the cytoplasmic domain of a serine chemotaxis receptor.

Authors:  K K Kim; H Yokota; S H Kim
Journal:  Nature       Date:  1999-08-19       Impact factor: 49.962

Review 2.  Structural proteomics: a tool for genome annotation.

Authors:  Alexander F Yakunin; Adelinda A Yee; Alexei Savchenko; Aled M Edwards; Cheryl H Arrowsmith
Journal:  Curr Opin Chem Biol       Date:  2004-02       Impact factor: 8.822

Review 3.  The PIN-domain toxin-antitoxin array in mycobacteria.

Authors:  Vickery L Arcus; Paul B Rainey; Susan J Turner
Journal:  Trends Microbiol       Date:  2005-08       Impact factor: 17.079

4.  The evolving relation between humans and Mycobacterium tuberculosis.

Authors:  B R Bloom; P M Small
Journal:  N Engl J Med       Date:  1998-03-05       Impact factor: 91.245

5.  The structure of an ancient conserved domain establishes a structural basis for stable histidine phosphorylation and identifies a new family of adenosine-specific kinases.

Authors:  J Shaun Lott; Blake Paget; Jodie M Johnston; Louis T J Delbaere; Jill A Sigrell-Simon; Mark J Banfield; Edward N Baker
Journal:  J Biol Chem       Date:  2006-05-30       Impact factor: 5.157

6.  The Mycobacterium tuberculosis LipB enzyme functions as a cysteine/lysine dyad acyltransferase.

Authors:  Qingjun Ma; Xin Zhao; Ali Nasser Eddine; Arie Geerlof; Xinping Li; John E Cronan; Stefan H E Kaufmann; Matthias Wilmanns
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-30       Impact factor: 11.205

Review 7.  Mycothiol biochemistry.

Authors:  Gerald L Newton; Robert C Fahey
Journal:  Arch Microbiol       Date:  2002-09-03       Impact factor: 2.552

8.  Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins.

Authors:  T C Mueser; N G Nossal; C C Hyde
Journal:  Cell       Date:  1996-06-28       Impact factor: 41.582

9.  Genetic requirements for mycobacterial survival during infection.

Authors:  Christopher M Sassetti; Eric J Rubin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-20       Impact factor: 11.205

Review 10.  The envelope of mycobacteria.

Authors:  P J Brennan; H Nikaido
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

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  6 in total

1.  Molecular modeling studies of Fatty acyl-CoA synthetase (FadD13) from Mycobacterium tuberculosis--a potential target for the development of antitubercular drugs.

Authors:  Nidhi Jatana; Sarvesh Jangid; Garima Khare; Anil K Tyagi; Narayanan Latha
Journal:  J Mol Model       Date:  2010-05-08       Impact factor: 1.810

Review 2.  Structural genomics and drug discovery for infectious diseases.

Authors:  W F Anderson
Journal:  Infect Disord Drug Targets       Date:  2009-11

Review 3.  Lessons from structural genomics.

Authors:  Thomas C Terwilliger; David Stuart; Shigeyuki Yokoyama
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

Review 4.  Benefits of structural genomics for drug discovery research.

Authors:  Marek Grabowski; Maksymilian Chruszcz; Matthew D Zimmerman; Olga Kirillova; Wladek Minor
Journal:  Infect Disord Drug Targets       Date:  2009-11

Review 5.  The progress made in determining the Mycobacterium tuberculosis structural proteome.

Authors:  Matthias T Ehebauer; Matthias Wilmanns
Journal:  Proteomics       Date:  2011-06-14       Impact factor: 3.984

6.  Crystal structure of tRNA m(1)A58 methyltransferase TrmI from Aquifex aeolicus in complex with S-adenosyl-L-methionine.

Authors:  Mitsuo Kuratani; Tatsuo Yanagisawa; Ryohei Ishii; Michiyo Matsuno; Shu-Yi Si; Kazushige Katsura; Ryoko Ushikoshi-Nakayama; Rie Shibata; Mikako Shirouzu; Yoshitaka Bessho; Shigeyuki Yokoyama
Journal:  J Struct Funct Genomics       Date:  2014-06-04
  6 in total

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