Literature DB >> 15036155

Structural proteomics: a tool for genome annotation.

Alexander F Yakunin1, Adelinda A Yee, Alexei Savchenko, Aled M Edwards, Cheryl H Arrowsmith.   

Abstract

In any newly sequenced genome, 30% to 50% of genes encode proteins with unknown molecular or cellular function. Fortunately, structural genomics is emerging as a powerful approach of functional annotation. Because of recent developments in high-throughput technologies, ongoing structural genomics projects are generating new structures at an unprecedented rate. In the past year, structural studies have identified many new structural motifs involved in enzymatic catalysis or in binding ligands or other macromolecules (DNA, RNA, protein). The efficiency by which function is deduced from structure can be further improved by the integration of structure with bioinformatics and other experimental approaches, such as screening for enzymatic activity or ligand binding.

Mesh:

Substances:

Year:  2004        PMID: 15036155     DOI: 10.1016/j.cbpa.2003.12.003

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  16 in total

1.  Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain.

Authors:  Akio Ebihara; Min Yao; Ryoji Masui; Isao Tanaka; Shigeyuki Yokoyama; Seiki Kuramitsu
Journal:  Protein Sci       Date:  2006-05-02       Impact factor: 6.725

2.  Structure of XC6422 from Xanthomonas campestris at 1.6 A resolution: a small serine alpha/beta-hydrolase.

Authors:  Chao Yu Yang; Ko Hsin Chin; Chia Cheng Chou; Andrew H J Wang; Shan Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-05-31

Review 3.  Identification of genes encoding tRNA modification enzymes by comparative genomics.

Authors:  Valérie de Crécy-Lagard
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

4.  Cloning, purification crystallization and preliminary X-ray characterization of a conserved hypothetical protein XC6422 from Xanthomonas campestris.

Authors:  Chao-Yu Yang; Ko-Hsin Chin; Chia-Cheng Chou; Hui-Lin Shr; Fei Philip Gao; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-30

5.  Preparation, crystallization and preliminary X-ray analysis of XC2382, an ApaG protein of unknown structure from Xanthomonas campestris.

Authors:  Ko-Hsin Chin; Chia-Cheng Chou; Cheng-Chung Lee; Hui-Lin Shr; Ping-Chiang Lyu; Andrew H-J Wang; Shan-Ho Chou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-30

Review 6.  The impact of extremophiles on structural genomics (and vice versa).

Authors:  Francis E Jenney; Michael W W Adams
Journal:  Extremophiles       Date:  2007-06-13       Impact factor: 2.395

7.  Crystal structure of yeast YHR049W/FSH1, a member of the serine hydrolase family.

Authors:  Sophie Quevillon-Cheruel; Nicolas Leulliot; Marc Graille; Nadège Hervouet; Frank Coste; Hélène Bénédetti; Charles Zelwer; Joel Janin; Herman Van Tilbeurgh
Journal:  Protein Sci       Date:  2005-03-31       Impact factor: 6.725

8.  Magnetic susceptibility-induced alignment of proteins in reverse micelles.

Authors:  Kathleen G Valentine; Maxim S Pometun; Joseph M Kielec; Robert E Baigelman; Jayme K Staub; Kristy L Owens; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2006-12-20       Impact factor: 15.419

Review 9.  Structural genomics as an approach towards understanding the biology of tuberculosis.

Authors:  Edward N Baker
Journal:  J Struct Funct Genomics       Date:  2007-08-01

10.  StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase.

Authors:  Adam T Zemla; Dorothy M Lang; Tanya Kostova; Raul Andino; Carol L Ecale Zhou
Journal:  BMC Bioinformatics       Date:  2011-06-02       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.