Literature DB >> 17650475

Things fall apart: biological species form unconnected parsimony networks.

Michael W Hart1, Jennifer Sunday.   

Abstract

The generality of operational species definitions is limited by problematic definitions of between-species divergence. A recent phylogenetic species concept based on a simple objective measure of statistically significant genetic differentiation uses between-species application of statistical parsimony networks that are typically used for population genetic analysis within species. Here we review recent phylogeographic studies and reanalyse several mtDNA barcoding studies using this method. We found that (i) alignments of DNA sequences typically fall apart into a separate subnetwork for each Linnean species (but with a higher rate of true positives for mtDNA data) and (ii) DNA sequences from single species typically stick together in a single haplotype network. Departures from these patterns are usually consistent with hybridization or cryptic species diversity.

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Year:  2007        PMID: 17650475      PMCID: PMC2391196          DOI: 10.1098/rsbl.2007.0307

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  20 in total

Review 1.  Using phylogeographic analyses of gene trees to test species status and processes.

Authors:  A R Templeton
Journal:  Mol Ecol       Date:  2001-03       Impact factor: 6.185

2.  Intraspecific gene genealogies: trees grafting into networks.

Authors: 
Journal:  Trends Ecol Evol       Date:  2001-01-01       Impact factor: 17.712

3.  A likelihood ratio test for species membership based on DNA sequence data.

Authors:  Mikhail V Matz; Rasmus Nielsen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

4.  Defining operational taxonomic units using DNA barcode data.

Authors:  Mark Blaxter; Jenna Mann; Tom Chapman; Fran Thomas; Claire Whitton; Robin Floyd; Eyualem Abebe
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

5.  Multilocus analyses of admixture and introgression among hybridizing Heliconius butterflies.

Authors:  Marcus R Kronforst; Laura G Young; Lauren M Blume; Lawrence E Gilbert
Journal:  Evolution       Date:  2006-06       Impact factor: 3.694

Review 6.  Receiver operating characteristic analysis: a tool for the quantitative evaluation of observer performance and imaging systems.

Authors:  Charles E Metz
Journal:  J Am Coll Radiol       Date:  2006-06       Impact factor: 5.532

7.  A species definition for the modern synthesis.

Authors:  J Mallet
Journal:  Trends Ecol Evol       Date:  1995-07       Impact factor: 17.712

8.  Morphological and genetic variation indicate cryptic species within Lamarck's little sea star, Parvulastra (=Patiriella) exigua.

Authors:  Michael W Hart; Carson C Keever; Alan J Dartnall; Maria Byrne
Journal:  Biol Bull       Date:  2006-04       Impact factor: 1.818

9.  Sampling strategies for delimiting species: genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata: Liolaemidae) in Andean-Patagonian South America.

Authors:  Mariana Morando; Luciano J Avila; Jack W Sites
Journal:  Syst Biol       Date:  2003-04       Impact factor: 15.683

10.  Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator.

Authors:  Paul D N Hebert; Erin H Penton; John M Burns; Daniel H Janzen; Winnie Hallwachs
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-01       Impact factor: 11.205

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  56 in total

1.  Whole-community DNA barcoding reveals a spatio-temporal continuum of biodiversity at species and genetic levels.

Authors:  Andrés Baselga; Tomochika Fujisawa; Alexandra Crampton-Platt; Johannes Bergsten; Peter G Foster; Michael T Monaghan; Alfried P Vogler
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

2.  Phylogenetic Network of Mitochondrial COI Gene Sequences Distinguishes 10 Taxa Within the Neotropical Albitarsis Group (Diptera: Culicidae), Confirming the Separate Species Status of Anopheles albitarsis H (Diptera: Culicidae) and Revealing a Novel Lineage, Anopheles albitarsis J.

Authors:  Maysa T Motoki; Yvonne-Marie Linton; Jan E Conn; Fredy Ruiz-Lopez; Richard C Wilkerson
Journal:  J Med Entomol       Date:  2021-03-12       Impact factor: 2.278

3.  Multiple genetic divergences and population expansions of a Mediterranean sandfly, Phlebotomus ariasi, in Europe during the Pleistocene glacial cycles.

Authors:  S S Mahamdallie; B Pesson; P D Ready
Journal:  Heredity (Edinb)       Date:  2010-08-25       Impact factor: 3.821

4.  Phylogenetic analysis of Ostreococcus virus sequences from the Patagonian Coast.

Authors:  Julieta M Manrique; Andrea Y Calvo; Leandro R Jones
Journal:  Virus Genes       Date:  2012-06-07       Impact factor: 2.332

5.  Species Delimitation and Description of Mesocriconema nebraskense n. sp. (Nematoda: Criconematidae), a Morphologically Cryptic, Parthenogenetic Species from North American Grasslands.

Authors:  Magdalena Olson; Timothy Harris; Rebecca Higgins; Peter Mullin; Kirsten Powers; Sean Olson; Thomas O Powers
Journal:  J Nematol       Date:  2017-03       Impact factor: 1.402

6.  DNA barcoding and species delimitation of the Old World tooth-carps, family Aphaniidae Hoedeman, 1949 (Teleostei: Cyprinodontiformes).

Authors:  Hamid Reza Esmaeili; Azad Teimori; Fatah Zarei; Golnaz Sayyadzadeh
Journal:  PLoS One       Date:  2020-04-16       Impact factor: 3.240

7.  Viola woosanensis, a recurrent spontaneous hybrid between V. ulleungdoensis and V. chaerophylloides (Violaceae) endemic to Ulleung Island, Korea.

Authors:  Hee-Young Gil; Seung-Chul Kim
Journal:  J Plant Res       Date:  2016-05-20       Impact factor: 2.629

8.  Diversity of endosymbiotic Nostoc in Gunnera magellanica from Tierra del Fuego, Chile [corrected].

Authors:  M A Fernández-Martínez; A de Los Ríos; L G Sancho; S Pérez-Ortega
Journal:  Microb Ecol       Date:  2013-04-23       Impact factor: 4.552

9.  A threat to coral reefs multiplied? Four species of crown-of-thorns starfish.

Authors:  Catherine Vogler; John Benzie; Harilaos Lessios; Paul Barber; Gert Wörheide
Journal:  Biol Lett       Date:  2008-12-23       Impact factor: 3.703

10.  Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis).

Authors:  Andrew M Griffiths; David W Sims; Stephen P Cotterell; Aliya El Nagar; Jim R Ellis; Arve Lynghammar; Matthew McHugh; Francis C Neat; Nicolas G Pade; Nuno Queiroz; Bárbara Serra-Pereira; Toby Rapp; Victoria J Wearmouth; Martin J Genner
Journal:  Proc Biol Sci       Date:  2010-01-27       Impact factor: 5.349

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