Literature DB >> 23695686

Whole-community DNA barcoding reveals a spatio-temporal continuum of biodiversity at species and genetic levels.

Andrés Baselga1, Tomochika Fujisawa, Alexandra Crampton-Platt, Johannes Bergsten, Peter G Foster, Michael T Monaghan, Alfried P Vogler.   

Abstract

A correlation of species and genetic diversity has been proposed but not uniformly supported. Large-scale DNA barcoding provides qualitatively novel data to test for correlations across hierarchical levels (genes, genealogies and species), and may help to unveil the underlying processes. Here we analyse sequence variation in communities of aquatic beetles across Europe (>5,000 individuals) to test for self-similarity of beta diversity patterns at multiple hierarchical levels. We show that community similarity at all levels decreases exponentially with geographic distance, and initial similarity is correlated with the lineage age, consistent with a molecular clock. Log-log correlations between lineage age, number of lineages, and range sizes, reveal a fractal geometry in time and space, indicating a spatio-temporal continuum of biodiversity across scales. Simulations show that these findings mirror dispersal-constrained models of haplotype distributions. These novel macroecological patterns may be explained by neutral evolutionary processes, acting continuously over time to produce multi-scale regularities of biodiversity.

Mesh:

Year:  2013        PMID: 23695686     DOI: 10.1038/ncomms2881

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  22 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  Towards a unification of unified theories of biodiversity.

Authors:  Brian J McGill
Journal:  Ecol Lett       Date:  2010-03-10       Impact factor: 9.492

3.  Accelerated species inventory on Madagascar using coalescent-based models of species delineation.

Authors:  Michael T Monaghan; Ruth Wild; Miranda Elliot; Tomochika Fujisawa; Michael Balke; Daegan J G Inward; David C Lees; Ravo Ranaivosolo; Paul Eggleton; Timothy G Barraclough; Alfried P Vogler
Journal:  Syst Biol       Date:  2009-07-01       Impact factor: 15.683

4.  The automation of Nested Clade Phylogeographic Analysis.

Authors:  Mahesh Panchal
Journal:  Bioinformatics       Date:  2006-12-01       Impact factor: 6.937

5.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

6.  Estimating divergence times in large phylogenetic trees.

Authors:  Tom Britton; Cajsa Lisa Anderson; David Jacquet; Samuel Lundqvist; Kåre Bremer
Journal:  Syst Biol       Date:  2007-10       Impact factor: 15.683

7.  Macroecology: the division of food and space among species on continents.

Authors:  J H Brown; B A Maurer
Journal:  Science       Date:  1989-03-03       Impact factor: 47.728

8.  jModelTest: phylogenetic model averaging.

Authors:  David Posada
Journal:  Mol Biol Evol       Date:  2008-04-08       Impact factor: 16.240

9.  Testing the species--genetic diversity correlation in the Aegean archipelago: toward a haplotype-based macroecology?

Authors:  Anna Papadopoulou; Ioannis Anastasiou; Foteini Spagopoulou; Malda Stalimerou; Sofia Terzopoulou; Anastasios Legakis; Alfried P Vogler
Journal:  Am Nat       Date:  2011-08       Impact factor: 3.926

Review 10.  The unified neutral theory of biodiversity and biogeography at age ten.

Authors:  James Rosindell; Stephen P Hubbell; Rampal S Etienne
Journal:  Trends Ecol Evol       Date:  2011-05-10       Impact factor: 17.712

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  18 in total

1.  Ecology has contrasting effects on genetic variation within species versus rates of molecular evolution across species in water beetles.

Authors:  Tomochika Fujisawa; Alfried P Vogler; Timothy G Barraclough
Journal:  Proc Biol Sci       Date:  2015-01-22       Impact factor: 5.349

2.  Influence of shifting cultivation practices on soil-plant-beetle interactions.

Authors:  Kalibulla Syed Ibrahim; Marcy D Momin; R Lalrotluanga; David Rosangliana; Souvik Ghatak; R Zothansanga; Nachimuthu Senthil Kumar; Guruswami Gurusubramanian
Journal:  Environ Sci Pollut Res Int       Date:  2016-05-07       Impact factor: 4.223

3.  Spatial and environmental correlates of species richness and turnover patterns in European cryptocephaline and chrysomeline beetles.

Authors:  Andrea Freijeiro; Andrés Baselga
Journal:  Zookeys       Date:  2016-06-09       Impact factor: 1.546

4.  Soil properties drive a negative correlation between species diversity and genetic diversity in a tropical seasonal rainforest.

Authors:  Wumei Xu; Lu Liu; Tianhua He; Min Cao; Liqing Sha; Yuehua Hu; Qiaoming Li; Jie Li
Journal:  Sci Rep       Date:  2016-02-10       Impact factor: 4.379

5.  Slowly dispersing neotenic beetles can speciate on a penny coin and generate space-limited diversity in the tropical mountains.

Authors:  Timothy C Bray; Ladislav Bocak
Journal:  Sci Rep       Date:  2016-09-16       Impact factor: 4.379

6.  An horizon scan of biogeography.

Authors:  Michael N Dawson; Adam C Algar; Alexandre Antonelli; Liliana M Dávalos; Edward Davis; Regan Early; Antoine Guisan; Roland Jansson; Jean-Philippe Lessard; Katharine A Marske; Jenny L McGuire; Alycia L Stigall; Nathan G Swenson; Niklaus E Zimmermann; Daniel G Gavin
Journal:  Front Biogeogr       Date:  2013

7.  Closely-related taxa influence woody species discrimination via DNA barcoding: evidence from global forest dynamics plots.

Authors:  Nancai Pei; David L Erickson; Bufeng Chen; Xuejun Ge; Xiangcheng Mi; Nathan G Swenson; Jin-Long Zhang; Frank A Jones; Chun-Lin Huang; Wanhui Ye; Zhanqing Hao; Chang-Fu Hsieh; Shawn Lum; Norman A Bourg; John D Parker; Jess K Zimmerman; William J McShea; Ida C Lopez; I-Fang Sun; Stuart J Davies; Keping Ma; W John Kress
Journal:  Sci Rep       Date:  2015-10-12       Impact factor: 4.379

8.  Rare failures of DNA barcodes [corrected] to separate morphologically distinct species in a biodiversity survey of Iberian leaf beetles.

Authors:  Andrés Baselga; Carola Gómez-Rodríguez; Francisco Novoa; Alfried P Vogler
Journal:  PLoS One       Date:  2013-09-05       Impact factor: 3.240

Review 9.  Fractal dimension of chromatin: potential molecular diagnostic applications for cancer prognosis.

Authors:  Konradin Metze
Journal:  Expert Rev Mol Diagn       Date:  2013-09       Impact factor: 5.225

10.  Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera.

Authors:  Marko Mutanen; Sami M Kivelä; Rutger A Vos; Camiel Doorenweerd; Sujeevan Ratnasingham; Axel Hausmann; Peter Huemer; Vlad Dincă; Erik J van Nieukerken; Carlos Lopez-Vaamonde; Roger Vila; Leif Aarvik; Thibaud Decaëns; Konstantin A Efetov; Paul D N Hebert; Arild Johnsen; Ole Karsholt; Mikko Pentinsaari; Rodolphe Rougerie; Andreas Segerer; Gerhard Tarmann; Reza Zahiri; H Charles J Godfray
Journal:  Syst Biol       Date:  2016-06-10       Impact factor: 9.160

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