Literature DB >> 17646285

Multiway analysis of epilepsy tensors.

Evrim Acar1, Canan Aykut-Bingol, Haluk Bingol, Rasmus Bro, Bülent Yener.   

Abstract

MOTIVATION: The success or failure of an epilepsy surgery depends greatly on the localization of epileptic focus (origin of a seizure). We address the problem of identification of a seizure origin through an analysis of ictal electroencephalogram (EEG), which is proven to be an effective standard in epileptic focus localization.
SUMMARY: With a goal of developing an automated and robust way of visual analysis of large amounts of EEG data, we propose a novel approach based on multiway models to study epilepsy seizure structure. Our contributions are 3-fold. First, we construct an Epilepsy Tensor with three modes, i.e. time samples, scales and electrodes, through wavelet analysis of multi-channel ictal EEG. Second, we demonstrate that multiway analysis techniques, in particular parallel factor analysis (PARAFAC), provide promising results in modeling the complex structure of an epilepsy seizure, localizing a seizure origin and extracting artifacts. Third, we introduce an approach for removing artifacts using multilinear subspace analysis and discuss its merits and drawbacks.
RESULTS: Ictal EEG analysis of 10 seizures from 7 patients are included in this study. Our results for 8 seizures match with clinical observations in terms of seizure origin and extracted artifacts. On the other hand, for 2 of the seizures, seizure localization is not achieved using an initial trial of PARAFAC modeling. In these cases, first, we apply an artifact removal method and subsequently apply the PARAFAC model on the epilepsy tensor from which potential artifacts have been removed. This method successfully identifies the seizure origin in both cases.

Entities:  

Mesh:

Year:  2007        PMID: 17646285     DOI: 10.1093/bioinformatics/btm210

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  21 in total

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2.  Tensor factorization toward precision medicine.

Authors:  Yuan Luo; Fei Wang; Peter Szolovits
Journal:  Brief Bioinform       Date:  2017-05-01       Impact factor: 11.622

3.  Turbo-SMT: Parallel Coupled Sparse Matrix-Tensor Factorizations and Applications.

Authors:  Evangelos E Papalexakis; Christos Faloutsos; Tom M Mitchell; Partha Pratim Talukdar; Nicholas D Sidiropoulos; Brian Murphy
Journal:  Stat Anal Data Min       Date:  2016-06-30       Impact factor: 1.051

4.  Scalable and Robust Tensor Decomposition of Spontaneous Stereotactic EEG Data.

Authors:  Justin P Haldar; John C Mosher; Dileep R Nair; Jorge A Gonzalez-Martinez; Richard M Leahy
Journal:  IEEE Trans Biomed Eng       Date:  2018-10-11       Impact factor: 4.538

5.  Unsupervised Discovery of Demixed, Low-Dimensional Neural Dynamics across Multiple Timescales through Tensor Component Analysis.

Authors:  Alex H Williams; Tony Hyun Kim; Forea Wang; Saurabh Vyas; Stephen I Ryu; Krishna V Shenoy; Mark Schnitzer; Tamara G Kolda; Surya Ganguli
Journal:  Neuron       Date:  2018-06-07       Impact factor: 17.173

6.  Sublineage structure analysis of Mycobacterium tuberculosis complex strains using multiple-biomarker tensors.

Authors:  Cagri Ozcaglar; Amina Shabbeer; Scott Vandenberg; Bülent Yener; Kristin P Bennett
Journal:  BMC Genomics       Date:  2011-07-27       Impact factor: 3.969

7.  Characteristics of evoked potential multiple EEG recordings in patients with chronic pain by means of parallel factor analysis.

Authors:  Juan Wang; Xiaoli Li; Chengbiao Lu; Logan J Voss; John P M Barnard; Jamie W Sleigh
Journal:  Comput Math Methods Med       Date:  2012-02-02       Impact factor: 2.238

Review 8.  Perturbation of Brain Oscillations after Ischemic Stroke: A Potential Biomarker for Post-Stroke Function and Therapy.

Authors:  Gratianne Rabiller; Ji-Wei He; Yasuo Nishijima; Aaron Wong; Jialing Liu
Journal:  Int J Mol Sci       Date:  2015-10-26       Impact factor: 5.923

9.  Bump time-frequency toolbox: a toolbox for time-frequency oscillatory bursts extraction in electrophysiological signals.

Authors:  François B Vialatte; Jordi Solé-Casals; Justin Dauwels; Monique Maurice; Andrzej Cichocki
Journal:  BMC Neurosci       Date:  2009-05-12       Impact factor: 3.288

10.  Canonical decomposition of ictal scalp EEG and accurate source localisation: principles and simulation study.

Authors:  Maarten De Vos; Lieven De Lathauwer; Bart Vanrumste; Sabine Van Huffel; W Van Paesschen
Journal:  Comput Intell Neurosci       Date:  2007
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