Literature DB >> 27672406

Turbo-SMT: Parallel Coupled Sparse Matrix-Tensor Factorizations and Applications.

Evangelos E Papalexakis1, Christos Faloutsos1, Tom M Mitchell1, Partha Pratim Talukdar2, Nicholas D Sidiropoulos3, Brian Murphy4.   

Abstract

How can we correlate the neural activity in the human brain as it responds to typed words, with properties of these terms (like 'edible', 'fits in hand')? In short, we want to find latent variables, that jointly explain both the brain activity, as well as the behavioral responses. This is one of many settings of the Coupled Matrix-Tensor Factorization (CMTF) problem. Can we enhance any CMTF solver, so that it can operate on potentially very large datasets that may not fit in main memory? We introduce Turbo-SMT, a meta-method capable of doing exactly that: it boosts the performance of any CMTF algorithm, produces sparse and interpretable solutions, and parallelizes any CMTF algorithm, producing sparse and interpretable solutions (up to 65 fold). Additionally, we improve upon ALS, the work-horse algorithm for CMTF, with respect to efficiency and robustness to missing values. We apply Turbo-SMT to BrainQ, a dataset consisting of a (nouns, brain voxels, human subjects) tensor and a (nouns, properties) matrix, with coupling along the nouns dimension. Turbo-SMT is able to find meaningful latent variables, as well as to predict brain activity with competitive accuracy. Finally, we demonstrate the generality of Turbo-SMT, by applying it on a Facebook dataset (users, 'friends', wall-postings); there, Turbo-SMT spots spammer-like anomalies.

Entities:  

Year:  2016        PMID: 27672406      PMCID: PMC5034949          DOI: 10.1002/sam.11315

Source DB:  PubMed          Journal:  Stat Anal Data Min        ISSN: 1932-1864            Impact factor:   1.051


  5 in total

1.  Shift-invariant multilinear decomposition of neuroimaging data.

Authors:  Morten Mørup; Lars Kai Hansen; Sidse Marie Arnfred; Lek-Heng Lim; Kristoffer Hougaard Madsen
Journal:  Neuroimage       Date:  2008-06-13       Impact factor: 6.556

2.  Predicting human brain activity associated with the meanings of nouns.

Authors:  Tom M Mitchell; Svetlana V Shinkareva; Andrew Carlson; Kai-Min Chang; Vicente L Malave; Robert A Mason; Marcel Adam Just
Journal:  Science       Date:  2008-05-30       Impact factor: 47.728

3.  Turbo-SMT: Accelerating Coupled Sparse Matrix-Tensor Factorizations by 200×.

Authors:  Evangelos E Papalexakis; Christos Faloutsos; Tom M Mitchell; Partha Pratim Talukdar; Nicholas D Sidiropoulos; Brian Murphy
Journal:  Proc SIAM Int Conf Data Min       Date:  2014

4.  Multiway analysis of epilepsy tensors.

Authors:  Evrim Acar; Canan Aykut-Bingol; Haluk Bingol; Rasmus Bro; Bülent Yener
Journal:  Bioinformatics       Date:  2007-07-01       Impact factor: 6.937

5.  Coupled analysis of in vitro and histology tissue samples to quantify structure-function relationship.

Authors:  Evrim Acar; George E Plopper; Bülent Yener
Journal:  PLoS One       Date:  2012-03-30       Impact factor: 3.240

  5 in total

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