Literature DB >> 17631531

Short-range order and collective dynamics of DMPC bilayers: a comparison between molecular dynamics simulations, X-ray, and neutron scattering experiments.

Jochen S Hub1, Tim Salditt, Maikel C Rheinstädter, Bert L de Groot.   

Abstract

We present an extensive comparison of short-range order and short wavelength dynamics of a hydrated phospholipid bilayer derived by molecular dynamics simulations, elastic x-ray, and inelastic neutron scattering experiments. The quantities that are compared between simulation and experiment include static and dynamic structure factors, reciprocal space mappings, and electron density profiles. We show that the simultaneous use of molecular dynamics and diffraction data can help to extract real space properties like the area per lipid and the lipid chain ordering from experimental data. In addition, we assert that the interchain distance can be computed to high accuracy from the interchain correlation peak of the structure factor. Moreover, it is found that the position of the interchain correlation peak is not affected by the area per lipid, while its correlation length decreases linearly with the area per lipid. This finding allows us to relate a property of the structure factor quantitatively to the area per lipid. Finally, the short wavelength dynamics obtained from the simulations and from inelastic neutron scattering are analyzed and compared. The conventional interpretation in terms of the three-effective-eigenmode model is found to be only partly suitable to describe the complex fluid dynamics of lipid chains.

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Year:  2007        PMID: 17631531      PMCID: PMC2025676          DOI: 10.1529/biophysj.107.104885

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  27 in total

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Authors:  Thomas M Weiss; Poe-Jou Chen; Harald Sinn; Ercan E Alp; Sow-Hsin Chen; Huey W Huang
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

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Authors:  Ryan W Benz; Francisco Castro-Román; Douglas J Tobias; Stephen H White
Journal:  Biophys J       Date:  2004-11-08       Impact factor: 4.033

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Journal:  Biophys J       Date:  2003-09       Impact factor: 4.033

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Authors:  E Lindahl; O Edholm
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

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Journal:  Biochemistry       Date:  1986-08-26       Impact factor: 3.162

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  17 in total

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Authors:  Clare L Armstrong; Matthew A Barrett; Arno Hiess; Tim Salditt; John Katsaras; An-Chang Shi; Maikel C Rheinstädter
Journal:  Eur Biophys J       Date:  2012-06-23       Impact factor: 1.733

2.  Acyl-chain correlation in membrane fusion intermediates: x-ray diffraction from the rhombohedral lipid phase.

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Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

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Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

4.  Influence of charge density on bilayer bending rigidity in lipid vesicles: a combined dynamic light scattering and neutron spin-echo study.

Authors:  B Brüning; R Stehle; P Falus; B Farago
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-17       Impact factor: 1.890

5.  Influence of cholesterol on the collective dynamics of the phospholipid acyl chains in model membranes.

Authors:  B Brüning; M C Rheinstädter; A Hiess; B Weinhausen; T Reusch; S Aeffner; T Salditt
Journal:  Eur Phys J E Soft Matter       Date:  2010-04-20       Impact factor: 1.890

6.  Alamethicin aggregation in lipid membranes.

Authors:  Jianjun Pan; Stephanie Tristram-Nagle; John F Nagle
Journal:  J Membr Biol       Date:  2009-09-30       Impact factor: 1.843

7.  Phase transitions in coarse-grained lipid bilayers containing cholesterol by molecular dynamics simulations.

Authors:  Qaiser Waheed; Richard Tjörnhammar; Olle Edholm
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

8.  Lipid gymnastics: evidence of complete acyl chain reversal in oxidized phospholipids from molecular simulations.

Authors:  Himanshu Khandelia; Ole G Mouritsen
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

9.  Direct comparison of elastic incoherent neutron scattering experiments with molecular dynamics simulations of DMPC phase transitions.

Authors:  Bachir Aoun; Eric Pellegrini; Marcus Trapp; Francesca Natali; Laura Cantù; Paola Brocca; Yuri Gerelli; Bruno Demé; Michael Marek Koza; Mark Johnson; Judith Peters
Journal:  Eur Phys J E Soft Matter       Date:  2016-04-27       Impact factor: 1.890

10.  Re-refinement from deposited X-ray data can deliver improved models for most PDB entries.

Authors:  Robbie P Joosten; Thomas Womack; Gert Vriend; Gérard Bricogne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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