Literature DB >> 19789905

Alamethicin aggregation in lipid membranes.

Jianjun Pan1, Stephanie Tristram-Nagle, John F Nagle.   

Abstract

X-ray scattering features induced by aggregates of alamethicin (Alm) were obtained in oriented stacks of model membranes of DOPC(diC18:1PC) and diC22:1PC. The first feature obtained near full hydration was Bragg rod in-plane scattering near 0.11 A(-1) in DOPC and near 0.08 A(-1) in diC22:1PC at a 1:10 Alm:lipid ratio. This feature is interpreted as bundles consisting of n Alm monomers in a barrel-stave configuration surrounding a water pore. Fitting the scattering data to previously published molecular dynamics simulations indicates that the number of peptides per bundle is n = 6 in DOPC and n >or= 9 in diC22:1PC. The larger bundle size in diC22:1PC is explained by hydrophobic mismatch of Alm with the thicker bilayer. A second diffuse scattering peak located at q(r) approximately 0.7 A(-1) is obtained for both DOPC and diC22:1PC at several peptide concentrations. Theoretical calculations indicate that this peak cannot be caused by the Alm bundle structure. Instead, we interpret it as being due to two-dimensional hexagonally packed clusters in equilibrium with Alm bundles. As the relative humidity was reduced, interactions between Alm in neighboring bilayers produced more peaks with three-dimensional crystallographic character that do not index with the conventional hexagonal space groups.

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Year:  2009        PMID: 19789905      PMCID: PMC2813886          DOI: 10.1007/s00232-009-9199-8

Source DB:  PubMed          Journal:  J Membr Biol        ISSN: 0022-2631            Impact factor:   1.843


  47 in total

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2.  Peptide aggregation and pore formation in a lipid bilayer: a combined coarse-grained and all atom molecular dynamics study.

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4.  Neutron off-plane scattering of aligned membranes. I. Method Of measurement.

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Authors:  C Nielsen; M Goulian; O S Andersen
Journal:  Biophys J       Date:  1998-04       Impact factor: 4.033

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Authors:  Thomas J McIntosh; Sidney A Simon
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

7.  Antimicrobial peptide pores in membranes detected by neutron in-plane scattering.

Authors:  K He; S J Ludtke; H W Huang; D L Worcester
Journal:  Biochemistry       Date:  1995-12-05       Impact factor: 3.162

8.  Conformation of alamethicin in oriented phospholipid bilayers determined by (15)N solid-state nuclear magnetic resonance.

Authors:  M Bak; R P Bywater; M Hohwy; J K Thomsen; K Adelhorst; H J Jakobsen; O W Sørensen; N C Nielsen
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

9.  Effect of chain length and unsaturation on elasticity of lipid bilayers.

Authors:  W Rawicz; K C Olbrich; T McIntosh; D Needham; E Evans
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

10.  Interaction of alamethicin pores in DMPC bilayers.

Authors:  D Constantin; G Brotons; A Jarre; C Li; T Salditt
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

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  14 in total

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Journal:  Orig Life Evol Biosph       Date:  2010-11-17       Impact factor: 1.950

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Authors:  Alexander L Boscia; Kiyotaka Akabori; Zachary Benamram; Jonathan A Michel; Michael S Jablin; Jonathan D Steckbeck; Ronald C Montelaro; John F Nagle; Stephanie Tristram-Nagle
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

3.  Synergistic Biophysical Techniques Reveal Structural Mechanisms of Engineered Cationic Antimicrobial Peptides in Lipid Model Membranes.

Authors:  Frank Heinrich; Aria Salyapongse; Akari Kumagai; Fernando G Dupuy; Karpur Shukla; Anja Penk; Daniel Huster; Robert K Ernst; Anna Pavlova; James C Gumbart; Berthony Deslouches; Y Peter Di; Stephanie Tristram-Nagle
Journal:  Chemistry       Date:  2020-04-28       Impact factor: 5.236

Review 4.  Dynamic membrane interactions of antibacterial and antifungal biomolecules, and amyloid peptides, revealed by solid-state NMR spectroscopy.

Authors:  Akira Naito; Nobuaki Matsumori; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-06-06       Impact factor: 3.770

5.  Introductory lecture: basic quantities in model biomembranes.

Authors:  John F Nagle
Journal:  Faraday Discuss       Date:  2013       Impact factor: 4.008

6.  Simulations of Membrane-Disrupting Peptides II: AMP Piscidin 1 Favors Surface Defects over Pores.

Authors:  B Scott Perrin; Riqiang Fu; Myriam L Cotten; Richard W Pastor
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

7.  Direct visualization of the alamethicin pore formed in a planar phospholipid matrix.

Authors:  Piotr Pieta; Jeff Mirza; Jacek Lipkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-10       Impact factor: 11.205

8.  A thermodynamic approach to alamethicin pore formation.

Authors:  Asif Rahaman; Themis Lazaridis
Journal:  Biochim Biophys Acta       Date:  2013-09-23

9.  Simulations of Membrane-Disrupting Peptides I: Alamethicin Pore Stability and Spontaneous Insertion.

Authors:  B Scott Perrin; Richard W Pastor
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

10.  Determination of mosaicity in oriented stacks of lipid bilayers.

Authors:  John F Nagle; Kiyotaka Akabori; Bradley W Treece; Stephanie Tristram-Nagle
Journal:  Soft Matter       Date:  2015-12-17       Impact factor: 3.679

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