Literature DB >> 1763051

Mutants of Escherichia coli initiator tRNA that suppress amber codons in Saccharomyces cerevisiae and are aminoacylated with tyrosine by yeast extracts.

C P Lee1, U L RajBhandary.   

Abstract

We recently described mutants of Escherichia coli initiator tRNA that suppress amber termination codons (UAG) in E. coli. These mutants have changes in the anticodon sequence (CAU----CUA) that allow them to read the amber codon and changes in the acceptor stem that allow them to bind to the ribosomal aminoacyl (A) site. We show here that a subset of these mutants suppress amber codons in Saccharomyces cerevisiae and that they are aminoacylated with tyrosine by yeast extracts. Analysis of a number of mutants as substrates for yeast tyrosyl-tRNA synthetase has led to identification of the C1.G72 base pair and the discriminator base A73, conserved in all eukaryotic cytoplasmic and archaebacterial tyrosine tRNAs, as being important for recognition. Our results suggest that the C1.G72 base pair and the discriminator base, in addition to the anticodon nucleotides previously identified [Bare, L.A. & Uhlenbeck, O.C. (1986) Biochemistry 25, 5825-5830] as important in yeast tyrosyl-tRNA synthetase recognition, may comprise the critical identity determinants in yeast tyrosine tRNA.

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Year:  1991        PMID: 1763051      PMCID: PMC53138          DOI: 10.1073/pnas.88.24.11378

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Identity elements for specific aminoacylation of yeast tRNA(Asp) by cognate aspartyl-tRNA synthetase.

Authors:  J Pütz; J D Puglisi; C Florentz; R Giegé
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

2.  Sequence-specific recognition of double helical nucleic acids by proteins.

Authors:  N C Seeman; J M Rosenberg; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1976-03       Impact factor: 11.205

3.  Structural basis of anticodon loop recognition by glutaminyl-tRNA synthetase.

Authors:  M A Rould; J J Perona; T A Steitz
Journal:  Nature       Date:  1991-07-18       Impact factor: 49.962

Review 4.  Recognition of tRNAs by aminoacyl-tRNA synthetases.

Authors:  L H Schulman
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1991

5.  Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification.

Authors:  T Muramatsu; K Nishikawa; F Nemoto; Y Kuchino; S Nishimura; T Miyazawa; S Yokoyama
Journal:  Nature       Date:  1988-11-10       Impact factor: 49.962

6.  Is there a discriminator site in transfer RNA?

Authors:  D M Crothers; T Seno; G Söll
Journal:  Proc Natl Acad Sci U S A       Date:  1972-10       Impact factor: 11.205

7.  Specific transcription of homologous class III genes in yeast-soluble cell-free extracts.

Authors:  M S Klekamp; P A Weil
Journal:  J Biol Chem       Date:  1982-07-25       Impact factor: 5.157

8.  Transformation of yeast.

Authors:  A Hinnen; J B Hicks; G R Fink
Journal:  Proc Natl Acad Sci U S A       Date:  1978-04       Impact factor: 11.205

Review 9.  Total synthesis of a gene.

Authors:  H G Khorana
Journal:  Science       Date:  1979-02-16       Impact factor: 47.728

10.  Anticodon and acceptor stem nucleotides in tRNA(Gln) are major recognition elements for E. coli glutaminyl-tRNA synthetase.

Authors:  M Jahn; M J Rogers; D Söll
Journal:  Nature       Date:  1991-07-18       Impact factor: 49.962

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  17 in total

1.  Domain-domain communication in a miniature archaebacterial tRNA synthetase.

Authors:  B A Steer; P Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Making sense out of nonsense.

Authors:  M E Saks
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

3.  Coordination of tRNA nuclear export with processing of tRNA.

Authors:  G Lipowsky; F R Bischoff; E Izaurralde; U Kutay; S Schäfer; H J Gross; H Beier; D Görlich
Journal:  RNA       Date:  1999-04       Impact factor: 4.942

4.  Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.

Authors:  Xiang-Lei Yang; Francella J Otero; Karla L Ewalt; Jianming Liu; Manal A Swairjo; Caroline Köhrer; Uttam L RajBhandary; Robert J Skene; Duncan E McRee; Paul Schimmel
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

Review 5.  Initiator transfer RNAs.

Authors:  U L RajBhandary
Journal:  J Bacteriol       Date:  1994-02       Impact factor: 3.490

6.  Genetic code in evolution: switching species-specific aminoacylation with a peptide transplant.

Authors:  K Wakasugi; C L Quinn; N Tao; P Schimmel
Journal:  EMBO J       Date:  1998-01-02       Impact factor: 11.598

7.  Import of amber and ochre suppressor tRNAs into mammalian cells: a general approach to site-specific insertion of amino acid analogues into proteins.

Authors:  C Köhrer; L Xie; S Kellerer; U Varshney; U L RajBhandary
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

8.  Twenty-first aminoacyl-tRNA synthetase-suppressor tRNA pairs for possible use in site-specific incorporation of amino acid analogues into proteins in eukaryotes and in eubacteria.

Authors:  A K Kowal; C Kohrer; U L RajBhandary
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-23       Impact factor: 11.205

9.  Human mitochondrial TyrRS disobeys the tyrosine identity rules.

Authors:  Luc Bonnefond; Magali Frugier; Richard Giegé; Joëlle Rudinger-Thirion
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

10.  Anticodon bases C34 and C35 are major, positive, identity elements in Saccharomyces cerevisiae tRNA(Trp).

Authors:  K D Yesland; J D Johnson
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

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