Literature DB >> 17629268

Oxygen activation by cytochrome p450: a thermodynamic analysis.

Willem H Koppenol1.   

Abstract

Electrode potentials for every intermediate in the cytochrome P450 cycle were estimated and evaluated by means of an oxidation state diagram. By this approach, and within the uncertainties of the approximations, the superoxide complex of cytochrome P450 at pH 7 is oxidizing: E degrees ' (P450FeO(2)2+, H+/P450FeOOH2+) = +0.93 V, and the Gibbs energy for the reaction of the hydroperoxo complex of cytochrome P450 to form compound I and water, P450FeOOH2+ + H+ = P450FeO2+ por(*+) + H2O, is 0 kJ/mol. Although cytochrome P450FeOOH2+ and cytochrome P450FeO2+ por(*+) are approximately isoenergetic, they are likely to react at different rates with substrates and may yield different products. Homolysis of the hydroperoxo complex of cytochrome P450 to compound II and the hydroxyl radical, P450FeOOH2+ = P450FeO2+ + HO(*), is unfavorable (DeltaG degrees ' = +92 kJ/mol), as is the dissociation into HOO- and cytochrome P450Fe3+ (+73 kJ/mol). It is shown that the sum of the Gibbs energy of association for cytochrome P450Fe3+ with the hydroperoxo anion and the Gibbs energy for the one-electron reduction of cytochrome P450FeOOH2+, relative to NHE, is constant (-203 kJ/mol). While the estimated E degrees ' (P450FeO(2)2+, H+/P450FeOOH2+) = +0.93 V at pH 7 is larger than necessary to effect reduction of cytochrome P450FeO(2)2+, the magnitude of this electrode potential implies that the binding constant for cytochrome P450Fe3+ with hydrogen peroxide is ca. 3 x 106 M(-1) at pH 7. An association constant of this magnitude ensures that a fraction of cytochrome P450FeOOH2+ is available to form compound I or to react with substrates directly, while a larger one would imply that compound I is too weak an oxidant. In general, the energetics of the reduction of dioxygen to water determines the energetics of catalysis of hydroxylations by cytochrome P450. These results enable calibration of energy levels obtained for intermediates in the cytochrome P450 reaction cycle obtained by ab initio calculations and provide insights into the catalytic efficiency of cytochrome P450 and guidelines for the development of competent hydroxylation catalysts.

Entities:  

Year:  2007        PMID: 17629268     DOI: 10.1021/ja071546p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

1.  Peroxo and Superoxo Moieties Bound to Copper Ion: Electron-Transfer Equilibrium with a Small Reorganization Energy.

Authors:  Rui Cao; Claudio Saracini; Jake W Ginsbach; Matthew T Kieber-Emmons; Maxime A Siegler; Edward I Solomon; Shunichi Fukuzumi; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2016-05-26       Impact factor: 15.419

Review 2.  Potential implication of the chemical properties and bioactivity of nitrone spin traps for therapeutics.

Authors:  Frederick A Villamena; Amlan Das; Kevin M Nash
Journal:  Future Med Chem       Date:  2012-06       Impact factor: 3.808

3.  Kinetic isotope effects in hydroxylation reactions effected by cytochrome P450 compounds I implicate multiple electrophilic oxidants for P450-catalyzed oxidations.

Authors:  Xin Sheng; Haoming Zhang; Paul F Hollenberg; Martin Newcomb
Journal:  Biochemistry       Date:  2009-02-24       Impact factor: 3.162

4.  Spectra and kinetic studies of the compound I derivative of cytochrome P450 119.

Authors:  Xin Sheng; John H Horner; Martin Newcomb
Journal:  J Am Chem Soc       Date:  2008-09-13       Impact factor: 15.419

5.  Quantitative production of compound I from a cytochrome P450 enzyme at low temperatures. Kinetics, activation parameters, and kinetic isotope effects for oxidation of benzyl alcohol.

Authors:  Qin Wang; Xin Sheng; John H Horner; Martin Newcomb
Journal:  J Am Chem Soc       Date:  2009-08-05       Impact factor: 15.419

Review 6.  Oxygen activation by cytochrome P450 monooxygenase.

Authors:  Djemel Hamdane; Haoming Zhang; Paul Hollenberg
Journal:  Photosynth Res       Date:  2008-07-04       Impact factor: 3.573

Review 7.  NADPH-cytochrome P450 oxidoreductase: prototypic member of the diflavin reductase family.

Authors:  Takashi Iyanagi; Chuanwu Xia; Jung-Ja P Kim
Journal:  Arch Biochem Biophys       Date:  2012-09-11       Impact factor: 4.013

8.  Formation of stable and metastable porphyrin- and corrole-iron(IV) complexes and isomerizations to iron(III) macrocycle radical cations.

Authors:  Zhengzheng Pan; Dilusha N Harischandra; Martin Newcomb
Journal:  J Inorg Biochem       Date:  2008-10-10       Impact factor: 4.155

9.  Oxidase uncoupling in heme monooxygenases: human cytochrome P450 CYP3A4 in Nanodiscs.

Authors:  Yelena V Grinkova; Ilia G Denisov; Mark A McLean; Stephen G Sligar
Journal:  Biochem Biophys Res Commun       Date:  2012-12-22       Impact factor: 3.575

10.  Jumpstarting the cytochrome P450 catalytic cycle with a hydrated electron.

Authors:  Huriye Erdogan; An Vandemeulebroucke; Thomas Nauser; Patricia L Bounds; Willem H Koppenol
Journal:  J Biol Chem       Date:  2017-11-06       Impact factor: 5.157

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