Literature DB >> 17625206

Oceanicola marinus sp. nov., a marine alphaproteobacterium isolated from seawater collected off Taiwan.

Kuan-Yin Lin1, Shih-Yi Sheu2, Poh-Shing Chang3, Jang-Cheon Cho4, Wen-Ming Chen1.   

Abstract

A short-rod-shaped, Gram-negative, non-motile bacterial strain, designated AZO-C(T), was isolated from a sample of seawater collected from the Eluanbi coast of Pingtung County in southern Taiwan and was characterized by using a polyphasic approach. Phylogenetic analyses based on 16S rRNA gene sequences showed that the strain formed a monophyletic branch at the periphery of the evolutionary radiation occupied by the genus Oceanicola in the order Rhodobacterales of the Alphaproteobacteria. The closest neighbours were Oceanicola batsensis HTCC2597(T) (95.6 % similarity), Oceanicola nanhaiensis SS011B1-20(T) (94.5 %) and Oceanicola granulosus HTCC2516(T) (94.0 %). The predominant fatty acid was 18 : 1 omega 7c (49.1 %), and significant amounts of 19 : 0 cyclo (24.6 %) and 16 : 0 (14.7 %) were present. The DNA-DNA relatedness of the strain with respect to recognized species of the genus Oceanicola was less than 70 %. The isolate was also distinguishable from members of the genus Oceanicola on the basis of phenotypic and biochemical characteristics. It is evident from the genotypic, chemotaxonomic and phenotypic data, therefore, that strain AZO-C(T) represents a novel species of the genus Oceanicola, for which the name Oceanicola marinus sp. nov. is proposed. The type strain is AZO-C(T) (=LMG 23705(T)=BCRC 17591(T)).

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Year:  2007        PMID: 17625206     DOI: 10.1099/ijs.0.65020-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  4 in total

1.  Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade.

Authors:  Paul G Beyersmann; Olga Chertkov; Jörn Petersen; Anne Fiebig; Amy Chen; Amrita Pati; Natalia Ivanova; Alla Lapidus; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2013-07-30

2.  Draft genome sequence of the xylan-degrading marine bacterium strain S124, representing a novel species of the genus Oceanicola.

Authors:  Young-Kyung Kwon; Jennifer Jooyoun Kim; Ji Hyung Kim; Seon-Mi Jeon; Bo-Ram Ye; Jiyi Jang; Soo-Jin Heo; Se Chang Park; Do-Hyung Kang; Chulhong Oh
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

3.  Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

Authors:  Marco Dogs; Hazuki Teshima; Jörn Petersen; Anne Fiebig; Olga Chertkov; Hajnalka Dalingault; Amy Chen; Amrita Pati; Lynne A Goodwin; Patrick Chain; John C Detter; Natalia Ivanova; Alla Lapidus; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2013-10-03

4.  Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.

Authors:  Sven Breider; Hazuki Teshima; Jörn Petersen; Olga Chertkov; Hajnalka Dalingault; Amy Chen; Amrita Pati; Natalia Ivanova; Alla Lapidus; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Brian J Tindall; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2014-01-25
  4 in total

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