Literature DB >> 17602663

Correlation of rhombic distortion of the type 1 copper site of M98Q amicyanin with increased electron transfer reorganization energy.

John K Ma1, F Scott Mathews, Victor L Davidson.   

Abstract

Mutation of the axial Met ligand of the type 1 copper site of amicyanin to Ala or Gln yielded M98A amicyanin, which exhibits typical axial type 1 ligation geometry but with a water molecule providing the axial ligand, and M98Q amicyanin, which exhibits significant rhombic distortion of the type 1 site (Carrell, C. J., Ma, J. K., Antholine, W. E., Hosler, J. P., Mathews, F. S., and Davidson, V. L. (2007) Biochemistry 46, 1900-1912). Despite the change of the axial ligand, the M98Q and M98A mutations had little effect on the redox potential of copper. The true electron transfer (ET) reactions from O-quinol methylamine dehydrogenase to oxidized native and mutant amicyanins revealed that the M98A mutation had little effect on kET, but the M98Q mutation reduced kET 45-fold. Thermodynamic analysis of the latter showed that the decrease in kET was due to an increase of 0.4 eV in the reorganization energy (lambda) associated with the ET reaction to M98Q amicyanin. No change in the experimentally determined electronic coupling or ET distance was observed, confirming that the mutation had not altered the rate-determining step for ET and that this was still a true ET reaction. The basis for the increased lambda is not the nature of the atom that provides the axial ligand because each uses an oxygen from Gln in M98Q amicyanin and from water in M98A amicyanin. Comparisons of the distance of the axial copper ligand from the equatorial plane that is formed by the other three copper ligands in isomorphous crystals of native and mutant amicyanins at atomic resolution indicate an increase in distance from 0.20 A in the native to 0.42 A in M98Q amicyanin and a slight decrease in distance for M98A amicyanin. This correlates with the rhombic distortion caused by the M98Q mutation that is clearly evident in the EPR and visible absorption spectra of the protein and suggests that the extent of rhombicity of the type 1 copper site influences the magnitude of lambda.

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Year:  2007        PMID: 17602663      PMCID: PMC2526061          DOI: 10.1021/bi700303e

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  37 in total

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Authors:  V L Davidson
Journal:  Acc Chem Res       Date:  2000-02       Impact factor: 22.384

2.  Crystal structure of an electron-transfer complex between methylamine dehydrogenase and amicyanin.

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Journal:  Biochemistry       Date:  1992-06-02       Impact factor: 3.162

Review 3.  Pyrroloquinoline quinone (PQQ) from methanol dehydrogenase and tryptophan tryptophylquinone (TTQ) from methylamine dehydrogenase.

Authors:  V L Davidson
Journal:  Adv Protein Chem       Date:  2001

4.  Quantum chemical calculations of the reorganization energy of blue-copper proteins.

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Journal:  Protein Sci       Date:  1998-12       Impact factor: 6.725

5.  Characterization of two inducible periplasmic c-type cytochromes from Paracoccus denitrificans.

Authors:  M Husain; V L Davidson
Journal:  J Biol Chem       Date:  1986-07-05       Impact factor: 5.157

6.  Structure of an electron transfer complex: methylamine dehydrogenase, amicyanin, and cytochrome c551i.

Authors:  L Chen; R C Durley; F S Mathews; V L Davidson
Journal:  Science       Date:  1994-04-01       Impact factor: 47.728

Review 7.  An outer-sphere hydrogen-bond network constrains copper coordination in blue proteins.

Authors:  Michael C Machczynski; Harry B Gray; John H Richards
Journal:  J Inorg Biochem       Date:  2002-02       Impact factor: 4.155

8.  The role of hydrogen bonding at the active site of a cupredoxin: the Phe114Pro azurin variant.

Authors:  Sachiko Yanagisawa; Mark J Banfield; Christopher Dennison
Journal:  Biochemistry       Date:  2006-07-25       Impact factor: 3.162

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Authors:  E T Adman
Journal:  Adv Protein Chem       Date:  1991

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Authors:  B G Malmström
Journal:  Eur J Biochem       Date:  1994-08-01
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  7 in total

1.  Replacement of the axial copper ligand methionine with lysine in amicyanin converts it to a zinc-binding protein that no longer binds copper.

Authors:  Narayanasami Sukumar; Moonsung Choi; Victor L Davidson
Journal:  J Inorg Biochem       Date:  2011-08-12       Impact factor: 4.155

2.  Protein control of true, gated, and coupled electron transfer reactions.

Authors:  Victor L Davidson
Journal:  Acc Chem Res       Date:  2008-06       Impact factor: 22.384

Review 3.  Cupredoxins--a study of how proteins may evolve to use metals for bioenergetic processes.

Authors:  Moonsung Choi; Victor L Davidson
Journal:  Metallomics       Date:  2011-01-24       Impact factor: 4.526

4.  The axial ligand and extent of protein folding determine whether Zn or Cu binds to amicyanin.

Authors:  John K Ma; Sheeyong Lee; Moonsung Choi; G Reid Bishop; Jonathan P Hosler; Victor L Davidson
Journal:  J Inorg Biochem       Date:  2007-10-01       Impact factor: 4.155

5.  Defining the role of the axial ligand of the type 1 copper site in amicyanin by replacement of methionine with leucine.

Authors:  Moonsung Choi; Narayanasami Sukumar; Aimin Liu; Victor L Davidson
Journal:  Biochemistry       Date:  2009-10-06       Impact factor: 3.162

Review 6.  Mechanisms for control of biological electron transfer reactions.

Authors:  Heather R Williamson; Brian A Dow; Victor L Davidson
Journal:  Bioorg Chem       Date:  2014-07-12       Impact factor: 5.275

7.  The sole tryptophan of amicyanin enhances its thermal stability but does not influence the electronic properties of the type 1 copper site.

Authors:  Brian A Dow; Narayanasami Sukumar; Jason O Matos; Moonsung Choi; Alfons Schulte; Suren A Tatulian; Victor L Davidson
Journal:  Arch Biochem Biophys       Date:  2014-04-01       Impact factor: 4.013

  7 in total

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