Literature DB >> 22071089

Replacement of the axial copper ligand methionine with lysine in amicyanin converts it to a zinc-binding protein that no longer binds copper.

Narayanasami Sukumar1, Moonsung Choi, Victor L Davidson.   

Abstract

The mutation of the axial ligand of the type I copper protein amicyanin from Met to Lys results in a protein that is spectroscopically invisible and redox inactive. M98K amicyanin acts as a competitive inhibitor in the reaction of native amicyanin with methylamine dehydrogenase indicating that the M98K mutation has not affected the affinity for its natural electron donor. The crystal structure of M98K amicyanin reveals that its overall structure is very similar to native amicyanin but that the type I binding site is occupied by zinc. Anomalous difference Fourier maps calculated using the data collected around the absorption edges of copper and zinc confirm the presence of Zn(2+) at the type I site. The Lys98 NZ donates a hydrogen bond to a well-ordered water molecule at the type I site which enhances the ability of Lys98 to provide a ligand for Zn(2+). Attempts to reconstitute M98K apoamicyanin with copper resulted in precipitation of the protein. The fact that the M98K mutation generated such a selective zinc-binding protein was surprising as ligation of zinc by Lys is rare and this ligand set is unique for zinc.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22071089      PMCID: PMC3233348          DOI: 10.1016/j.jinorgbio.2011.08.002

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  32 in total

1.  A joint x-ray and neutron study on amicyanin reveals the role of protein dynamics in electron transfer.

Authors:  N Sukumar; F S Mathews; P Langan; V L Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-29       Impact factor: 11.205

2.  Crystal structure of an electron-transfer complex between methylamine dehydrogenase and amicyanin.

Authors:  L Chen; R Durley; B J Poliks; K Hamada; Z Chen; F S Mathews; V L Davidson; Y Satow; E Huizinga; F M Vellieux
Journal:  Biochemistry       Date:  1992-06-02       Impact factor: 3.162

3.  Analysis of zinc-ligand bond lengths in metalloproteins: trends and patterns.

Authors:  Bruno Tamames; Sérgio Filipe Sousa; Juan Tamames; Pedro Alexandrino Fernandes; Maria João Ramos
Journal:  Proteins       Date:  2007-11-15

4.  Structure of an electron transfer complex: methylamine dehydrogenase, amicyanin, and cytochrome c551i.

Authors:  L Chen; R C Durley; F S Mathews; V L Davidson
Journal:  Science       Date:  1994-04-01       Impact factor: 47.728

5.  Analysis of zinc binding sites in protein crystal structures.

Authors:  I L Alberts; K Nadassy; S J Wodak
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

6.  The axial ligand and extent of protein folding determine whether Zn or Cu binds to amicyanin.

Authors:  John K Ma; Sheeyong Lee; Moonsung Choi; G Reid Bishop; Jonathan P Hosler; Victor L Davidson
Journal:  J Inorg Biochem       Date:  2007-10-01       Impact factor: 4.155

7.  Crystal structure analysis of amicyanin and apoamicyanin from Paracoccus denitrificans at 2.0 A and 1.8 A resolution.

Authors:  R Durley; L Chen; L W Lim; F S Mathews; V L Davidson
Journal:  Protein Sci       Date:  1993-05       Impact factor: 6.725

8.  X-ray structure of the cupredoxin amicyanin, from Paracoccus denitrificans, refined at 1.31 A resolution.

Authors:  L M Cunane; Z W Chen; R C Durley; F S Mathews
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-07-01

Review 9.  Copper protein structures.

Authors:  E T Adman
Journal:  Adv Protein Chem       Date:  1991

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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3.  A conserved acidic residue in phenylalanine hydroxylase contributes to cofactor affinity and catalysis.

Authors:  Judith A Ronau; Lake N Paul; Julian E Fuchs; Klaus R Liedl; Mahdi M Abu-Omar; Chittaranjan Das
Journal:  Biochemistry       Date:  2014-10-23       Impact factor: 3.162

  3 in total

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