Literature DB >> 17597484

Comparison of information and variance maximization strategies for characterizing neural feature selectivity.

Tatyana O Sharpee1.   

Abstract

This paper compares several statistical methods for analyzing neural feature selectivity with natural stimuli. Despite the non-Gaussian character of correlations in natural stimuli, several relevant stimulus dimensions can be found by maximizing either information or, as is demonstrated here, variance. In the case of information, the relevance of each dimension is quantified by a Kullback-Leibler divergence between the full input probability distribution and that across inputs associated with positive neural responses, both projected onto that dimension. We demonstrate that least-square matching of the nonlinear prediction based on several dimensions relevant to the recorded spike trains yields an optimization scheme similar to information maximization. The relevant dimensions are found as those that capture the most variance in neural response. The variance along a stimulus dimension is given by a Rényi divergence of order 2 instead of the Kullback-Leibler divergence used for maximizing information. Statistical errors expected for the two schemes are shown to be similar through both analytical and numerical calculations. However, in the asymptotic limit of large spike numbers, maximizing information results in smaller errors than variance optimization. Numerical simulations for model cells with different noise levels show that this trend persists, and possibly increases, when the number of spikes decreases. This makes the problem of finding relevant dimensions one of the examples where information-theoretic approaches are no more data limited than the variance-based measures. Variance and information optimization also outperform methods based on the spike-triggered average for all numbers of spikes and neural noise levels. 2007 John Wiley & Sons, Ltd

Mesh:

Year:  2007        PMID: 17597484     DOI: 10.1002/sim.2931

Source DB:  PubMed          Journal:  Stat Med        ISSN: 0277-6715            Impact factor:   2.373


  13 in total

1.  The accuracy of membrane potential reconstruction based on spiking receptive fields.

Authors:  Deepankar Mohanty; Benjamin Scholl; Nicholas J Priebe
Journal:  J Neurophysiol       Date:  2012-01-25       Impact factor: 2.714

2.  Receptive field dimensionality increases from the auditory midbrain to cortex.

Authors:  Craig A Atencio; Tatyana O Sharpee; Christoph E Schreiner
Journal:  J Neurophysiol       Date:  2012-02-08       Impact factor: 2.714

3.  Characterizing responses of translation-invariant neurons to natural stimuli: maximally informative invariant dimensions.

Authors:  Michael Eickenberg; Ryan J Rowekamp; Minjoon Kouh; Tatyana O Sharpee
Journal:  Neural Comput       Date:  2012-06-26       Impact factor: 2.026

4.  On the importance of static nonlinearity in estimating spatiotemporal neural filters with natural stimuli.

Authors:  Tatyana O Sharpee; Kenneth D Miller; Michael P Stryker
Journal:  J Neurophysiol       Date:  2008-03-19       Impact factor: 2.714

5.  Preserving information in neural transmission.

Authors:  Lawrence C Sincich; Jonathan C Horton; Tatyana O Sharpee
Journal:  J Neurosci       Date:  2009-05-13       Impact factor: 6.167

6.  Trade-off between curvature tuning and position invariance in visual area V4.

Authors:  Tatyana O Sharpee; Minjoon Kouh; John H Reynolds
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

Review 7.  Computational identification of receptive fields.

Authors:  Tatyana O Sharpee
Journal:  Annu Rev Neurosci       Date:  2013-07-08       Impact factor: 12.449

8.  Cooperative nonlinearities in auditory cortical neurons.

Authors:  Craig A Atencio; Tatyana O Sharpee; Christoph E Schreiner
Journal:  Neuron       Date:  2008-06-26       Impact factor: 17.173

9.  Hierarchical computation in the canonical auditory cortical circuit.

Authors:  Craig A Atencio; Tatyana O Sharpee; Christoph E Schreiner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-16       Impact factor: 11.205

10.  Estimating linear-nonlinear models using Renyi divergences.

Authors:  Minjoon Kouh; Tatyana O Sharpee
Journal:  Network       Date:  2009       Impact factor: 1.273

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