Literature DB >> 17595295

U bodies are cytoplasmic structures that contain uridine-rich small nuclear ribonucleoproteins and associate with P bodies.

Ji-Long Liu1, Joseph G Gall.   

Abstract

Uridine-rich small nuclear ribonucleoproteins (U snRNPs) are involved in key steps of pre-mRNA processing in the nucleus of eukaryotic cells. U snRNPs are enriched in the nucleus in discrete organelles that include speckles, Cajal bodies, and histone locus bodies. However, most U snRNPs are assembled in the cytoplasm, not in the nucleus. Despite extensive biochemical information, little is known about the spatial organization of U snRNPs in the cytoplasm. Here we show that U snRNPs in Drosophila are concentrated in discrete cytoplasmic structures, which we call U bodies, because they contain the major U snRNPs. In addition to snRNPs, U bodies contain essential snRNP assembly factors, suggesting that U bodies are sites for assembly or storage of snRNPs before their import into the nucleus. U bodies invariably associate with P bodies, which are involved in RNA surveillance and decay. Genetic disruption of P body components affects the organization of U bodies, suggesting that the two cytoplasmic bodies may cooperate in regulating aspects of snRNP metabolism. The identification of U bodies provides an opportunity to correlate specific biochemical steps of snRNP biogenesis with structural features of the cytoplasm.

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Year:  2007        PMID: 17595295      PMCID: PMC1899408          DOI: 10.1073/pnas.0704977104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Symmetrical dimethylation of arginine residues in spliceosomal Sm protein B/B' and the Sm-like protein LSm4, and their interaction with the SMN protein.

Authors:  H Brahms; L Meheus; V de Brabandere; U Fischer; R Lührmann
Journal:  RNA       Date:  2001-11       Impact factor: 4.942

Review 2.  Assembly and traffic of small nuclear RNPs.

Authors:  Edouard Bertrand; Rémy Bordonné
Journal:  Prog Mol Subcell Biol       Date:  2004

3.  Inhibition of apoptosis by Z-VAD-fmk in SMN-depleted S2 cells.

Authors:  Raju Ilangovan; William L Marshall; Yimin Hua; Jianhua Zhou
Journal:  J Biol Chem       Date:  2003-06-03       Impact factor: 5.157

Review 4.  SMN-mediated assembly of RNPs: a complex story.

Authors:  Gunter Meister; Christian Eggert; Utz Fischer
Journal:  Trends Cell Biol       Date:  2002-10       Impact factor: 20.808

5.  The fragile X-related gene affects the crawling behavior of Drosophila larvae by regulating the mRNA level of the DEG/ENaC protein pickpocket1.

Authors:  Kanyan Xu; Brigitte A Bogert; Wenjun Li; Kimmy Su; Alan Lee; Fen-Biao Gao
Journal:  Curr Biol       Date:  2004-06-22       Impact factor: 10.834

Review 6.  The spliceosome: the most complex macromolecular machine in the cell?

Authors:  Timothy W Nilsen
Journal:  Bioessays       Date:  2003-12       Impact factor: 4.345

7.  The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci.

Authors:  Dierk Ingelfinger; Donna J Arndt-Jovin; Reinhard Lührmann; Tilmann Achsel
Journal:  RNA       Date:  2002-12       Impact factor: 4.942

Review 8.  The SMN complex, an assemblyosome of ribonucleoproteins.

Authors:  Sergey Paushkin; Amélie K Gubitz; Séverine Massenet; Gideon Dreyfuss
Journal:  Curr Opin Cell Biol       Date:  2002-06       Impact factor: 8.382

9.  Me31B silences translation of oocyte-localizing RNAs through the formation of cytoplasmic RNP complex during Drosophila oogenesis.

Authors:  A Nakamura; R Amikura; K Hanyu; S Kobayashi
Journal:  Development       Date:  2001-09       Impact factor: 6.868

10.  Cup is an eIF4E binding protein required for both the translational repression of oskar and the recruitment of Barentsz.

Authors:  James E Wilhelm; Meredith Hilton; Quinlan Amos; William J Henzel
Journal:  J Cell Biol       Date:  2003-12-22       Impact factor: 10.539

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  50 in total

1.  Sm proteins specify germ cell fate by facilitating oskar mRNA localization.

Authors:  Graydon B Gonsalvez; T K Rajendra; Ying Wen; Kavita Praveen; A Gregory Matera
Journal:  Development       Date:  2010-07       Impact factor: 6.868

2.  Spliceosomal small nuclear ribonucleoprotein particles repeatedly cycle through Cajal bodies.

Authors:  David Stanek; Jarmila Pridalová-Hnilicová; Ivan Novotný; Martina Huranová; Michaela Blazíková; Xin Wen; Aparna K Sapra; Karla M Neugebauer
Journal:  Mol Biol Cell       Date:  2008-03-26       Impact factor: 4.138

3.  Translation repressors, an RNA helicase, and developmental cues control RNP phase transitions during early development.

Authors:  Arnaud Hubstenberger; Scott L Noble; Cristiana Cameron; Thomas C Evans
Journal:  Dev Cell       Date:  2013-10-28       Impact factor: 12.270

Review 4.  RNA granules in germ cells.

Authors:  Ekaterina Voronina; Geraldine Seydoux; Paolo Sassone-Corsi; Ippei Nagamori
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-12-01       Impact factor: 10.005

5.  Periodic expression of Sm proteins parallels formation of nuclear Cajal bodies and cytoplasmic snRNP-rich bodies.

Authors:  Dariusz J Smoliński; Bogdan Wróbel; Anna Noble; Agnieszka Zienkiewicz; Alicja Górska-Brylass
Journal:  Histochem Cell Biol       Date:  2011-09-09       Impact factor: 4.304

6.  Intracellular Bacterial Pathogens Trigger the Formation of U Small Nuclear RNA Bodies (U Bodies) through Metabolic Stress Induction.

Authors:  Jessica Tsalikis; Ivan Tattoli; Arthur Ling; Matthew T Sorbara; David O Croitoru; Dana J Philpott; Stephen E Girardin
Journal:  J Biol Chem       Date:  2015-07-01       Impact factor: 5.157

Review 7.  Effects of stress and aging on ribonucleoprotein assembly and function in the germ line.

Authors:  Jennifer A Schisa
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-11-13       Impact factor: 9.957

8.  Instructed Assembly of Peptides for Intracellular Enzyme Sequestration.

Authors:  Zhaoqianqi Feng; Huaimin Wang; Bing Xu
Journal:  J Am Chem Soc       Date:  2018-11-21       Impact factor: 15.419

9.  Fluorescent In Situ Hybridization of Nuclear Bodies in Drosophila melanogaster Ovaries.

Authors:  Zehra F Nizami; Ji-Long Liu; Joseph G Gall
Journal:  Methods Mol Biol       Date:  2015

10.  The Yb protein defines a novel organelle and regulates male germline stem cell self-renewal in Drosophila melanogaster.

Authors:  Akos Szakmary; Mary Reedy; Hongying Qi; Haifan Lin
Journal:  J Cell Biol       Date:  2009-05-11       Impact factor: 10.539

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