Literature DB >> 17590017

ENDOR spectroscopy reveals light induced movement of the H-bond from Ser-L223 upon forming the semiquinone (Q(B)(-)(*)) in reaction centers from Rhodobacter sphaeroides.

M L Paddock1, M Flores, R Isaacson, C Chang, E C Abresch, M Y Okamura.   

Abstract

Proton ENDOR spectroscopy was used to monitor local conformational changes in bacterial reaction centers (RC) associated with the electron-transfer reaction DQB --> D+*QB-* using mutant RCs capable of photoreducing QB at cryogenic temperatures. The charge separated state D+*QB-* was studied in mutant RCs formed by either (i) illuminating at low temperature (77 K) a sample frozen in the dark (ground state protein conformation) or (ii) illuminating at room temperature prior to and during freezing (charge separated state protein conformation). The charge recombination rates from the two states differed greatly (>10(6) fold) as shown previously, indicating a structural change (Paddock et al. (2006) Biochemistry 45, 14032-14042). ENDOR spectra of QB-* from both samples (35 GHz, 77 K) showed several H-bond hyperfine couplings that were similar to those for QB-* in native RCs indicating that in all RCs, QB-* was located at the proximal position near the metal site. In contrast, one set of hyperfine couplings were not observed in the dark frozen samples but were observed only in samples frozen under illumination in which the protein can relax prior to freezing. This flexible H-bond was assigned to an interaction between the Ser-L223 hydroxyl and QB-* on the basis of its absence in Ser L223 --> Ala mutant RCs. Thus, part of the protein relaxation, in response to light induced charge separation, involves the formation of an H-bond between the OH group of Ser-L223 and the anionic semiquinone QB-*. These results show the flexibility of the Ser-L223 H-bond, which is essential for its function in proton transfer to reduced QB.

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Year:  2007        PMID: 17590017      PMCID: PMC2597558          DOI: 10.1021/bi7005256

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  41 in total

1.  Trapping conformational intermediate states in the reaction center protein from photosynthetic bacteria.

Authors:  Q Xu; M R Gunner
Journal:  Biochemistry       Date:  2001-03-13       Impact factor: 3.162

2.  Absence of large-scale displacement of quinone QB in bacterial photosynthetic reaction centers.

Authors:  Jacques Breton
Journal:  Biochemistry       Date:  2004-03-30       Impact factor: 3.162

3.  Conformational gating of the electron transfer reaction QA-.QB --> QAQB-. in bacterial reaction centers of Rhodobacter sphaeroides determined by a driving force assay.

Authors:  M S Graige; G Feher; M Y Okamura
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-29       Impact factor: 11.205

4.  The electronic structure of Fe2+ in reaction centers from Rhodopseudomonas sphaeroides. I. Static magnetization measurements.

Authors:  W F Butler; D C Johnston; H B Shore; D R Fredkin; M Y Okamura; G Feher
Journal:  Biophys J       Date:  1980-12       Impact factor: 4.033

Review 5.  Hydrogen bonded chain mechanisms for proton conduction and proton pumping.

Authors:  J F Nagle; S Tristram-Nagle
Journal:  J Membr Biol       Date:  1983       Impact factor: 1.843

6.  Iron-depleted reaction centers from Rhodopseudomonas sphaeroides R-26.1: characterization and reconstitution with Fe2+, Mn2+, Co2+, Ni2+, Cu2+, and Zn2+.

Authors:  R J Debus; G Feher; M Y Okamura
Journal:  Biochemistry       Date:  1986-04-22       Impact factor: 3.162

7.  Pathway of proton transfer in bacterial reaction centers: role of aspartate-L213 in proton transfers associated with reduction of quinoneto dihydroquinone.

Authors:  M L Paddock; S H Rongey; P H McPherson; A Juth; G Feher; M Y Okamura
Journal:  Biochemistry       Date:  1994-01-25       Impact factor: 3.162

8.  X-Ray structure determination of three mutants of the bacterial photosynthetic reaction centers from Rb. sphaeroides; altered proton transfer pathways.

Authors:  Qiang Xu; Herbert L Axelrod; Edward C Abresch; Mark L Paddock; Melvin Y Okamura; George Feher
Journal:  Structure       Date:  2004-04       Impact factor: 5.006

9.  Protein-cofactor interactions in bacterial reaction centers from Rhodobacter sphaeroides R-26: I. Identification of the ENDOR lines associated with the hydrogen bonds to the primary quinone QA*-.

Authors:  M Flores; R Isaacson; E Abresch; R Calvo; W Lubitz; G Feher
Journal:  Biophys J       Date:  2006-02-10       Impact factor: 4.033

10.  Variation of Ser-L223 hydrogen bonding with the QB redox state in reaction centers from Rhodobacter sphaeroides.

Authors:  Hiroshi Ishikita; Ernst-Walter Knapp
Journal:  J Am Chem Soc       Date:  2004-06-30       Impact factor: 15.419

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2.  Hydrogen bonding and spin density distribution in the Qb semiquinone of bacterial reaction centers and comparison with the Qa site.

Authors:  Erik Martin; Rimma I Samoilova; Kupala V Narasimhulu; Tzu-Jen Lin; Patrick J O'Malley; Colin A Wraight; Sergei A Dikanov
Journal:  J Am Chem Soc       Date:  2011-03-18       Impact factor: 15.419

3.  Hydrogen bonds between nitrogen donors and the semiquinone in the Q(B) site of bacterial reaction centers.

Authors:  Erik Martin; Rimma I Samoilova; Kupala V Narasimhulu; Colin A Wraight; Sergei A Dikanov
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4.  Pulse Q-band EPR and ENDOR spectroscopies of the photochemically generated monoprotonated benzosemiquinone radical in frozen alcoholic solution.

Authors:  Marco Flores; Melvin Y Okamura; Jens Niklas; Maria-Eirini Pandelia; Wolfgang Lubitz
Journal:  J Phys Chem B       Date:  2012-07-20       Impact factor: 2.991

5.  Mechanism of proton-coupled quinone reduction in Photosystem II.

Authors:  Keisuke Saito; A William Rutherford; Hiroshi Ishikita
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

6.  Characterization of mercury(II)-induced inhibition of photochemistry in the reaction center of photosynthetic bacteria.

Authors:  Gábor Sipka; Mariann Kis; Péter Maróti
Journal:  Photosynth Res       Date:  2017-12-28       Impact factor: 3.573

7.  Hydrogen bonding between the Q(B) site ubisemiquinone and Ser-L223 in the bacterial reaction center: a combined spectroscopic and computational perspective.

Authors:  Erik Martin; Amgalanbaatar Baldansuren; Tzu-Jen Lin; Rimma I Samoilova; Colin A Wraight; Sergei A Dikanov; Patrick J O'Malley
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8.  Redox potential tuning through differential quinone binding in the photosynthetic reaction center of Rhodobacter sphaeroides.

Authors:  Josh V Vermaas; Alexander T Taguchi; Sergei A Dikanov; Colin A Wraight; Emad Tajkhorshid
Journal:  Biochemistry       Date:  2015-03-23       Impact factor: 3.162

9.  EPR and ENDOR Investigation of Rhodosemiquinone in Bacterial Reaction Centers Formed by B-Branch Electron Transfer.

Authors:  M L Paddock; M Flores; R Isaacson; J N Shepherd; M Y Okamura
Journal:  Appl Magn Reson       Date:  2010-01-01       Impact factor: 0.831

10.  The fe2+ site of photosynthetic reaction centers probed by multiple scattering x-ray absorption fine structure spectroscopy: improving structure resolution in dry matrices.

Authors:  Giulia Veronesi; Lisa Giachini; Francesco Francia; Antonia Mallardi; Gerardo Palazzo; Federico Boscherini; Giovanni Venturoli
Journal:  Biophys J       Date:  2008-05-02       Impact factor: 4.033

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