Literature DB >> 18456824

The fe2+ site of photosynthetic reaction centers probed by multiple scattering x-ray absorption fine structure spectroscopy: improving structure resolution in dry matrices.

Giulia Veronesi1, Lisa Giachini, Francesco Francia, Antonia Mallardi, Gerardo Palazzo, Federico Boscherini, Giovanni Venturoli.   

Abstract

We report on the x-ray absorption fine structure of the Fe(2+) site in photosynthetic reaction centers from Rhodobacter sphaeroides. Crystallographic studies show that Fe(2+) is ligated with four N(epsilon) atoms from four histidine (His) residues and two O(epsilon) atoms from a Glu residue. By considering multiple scattering contributions to the x-ray absorption fine structure function, we improved the structural resolution of the site: His residues were split into two groups, characterized by different Fe-N(epsilon) distances, and two distinct Fe-O(epsilon) bond lengths resolved. The effect of the environment was studied by embedding the reaction centers into a polyvinyl alcohol film and into a dehydrated trehalose matrix. Incorporation into trehalose caused elongation in one of the two Fe-N(epsilon) distances, and in one Fe-O(epsilon) bond length, compared with the polyvinyl alcohol film. The asymmetry detected in the cluster of His residues and its response to incorporation into trehalose are ascribed to the hydrogen bonds between two His residues and the quinone acceptors. The structural distortions observed in the trehalose matrix indicate a strong interaction between the reaction-centers surface and the water-trehalose matrix, which propagates deeply into the interior of the protein. The absence of matrix effects on the Debye-Waller factors is brought back to the static heterogeneity and rigidity of the ligand cluster.

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Year:  2008        PMID: 18456824      PMCID: PMC2440445          DOI: 10.1529/biophysj.108.132654

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Near-edge x-ray-absorption fine structure of Pb: A comparison of theory and experiment.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1993-06-01

2.  Absence of large-scale displacement of quinone QB in bacterial photosynthetic reaction centers.

Authors:  Jacques Breton
Journal:  Biochemistry       Date:  2004-03-30       Impact factor: 3.162

3.  pH modulates the quinone position in the photosynthetic reaction center from Rhodobacter sphaeroides in the neutral and charge separated states.

Authors:  Juergen Koepke; Eva-Maria Krammer; Astrid R Klingen; Pierre Sebban; G Matthias Ullmann; Günter Fritzsch
Journal:  J Mol Biol       Date:  2007-05-10       Impact factor: 5.469

4.  Conformational gating of the electron transfer reaction QA-.QB --> QAQB-. in bacterial reaction centers of Rhodobacter sphaeroides determined by a driving force assay.

Authors:  M S Graige; G Feher; M Y Okamura
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-29       Impact factor: 11.205

5.  Structure of the reaction center from Rhodobacter sphaeroides R-26: protein-cofactor (quinones and Fe2+) interactions.

Authors:  J P Allen; G Feher; T O Yeates; H Komiya; D C Rees
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

6.  Kinetic phases in the electron transfer from P+QA-QB to P+QAQB- and the associated processes in Rhodobacter sphaeroides R-26 reaction centers.

Authors:  J Li; D Gilroy; D M Tiede; M R Gunner
Journal:  Biochemistry       Date:  1998-03-03       Impact factor: 3.162

Review 7.  Internal dynamics and protein-matrix coupling in trehalose-coated proteins.

Authors:  Lorenzo Cordone; Grazia Cottone; Sergio Giuffrida; Gerardo Palazzo; Giovanni Venturoli; Cristiano Viappiani
Journal:  Biochim Biophys Acta       Date:  2005-04-15

8.  Iron-depleted reaction centers from Rhodopseudomonas sphaeroides R-26.1: characterization and reconstitution with Fe2+, Mn2+, Co2+, Ni2+, Cu2+, and Zn2+.

Authors:  R J Debus; G Feher; M Y Okamura
Journal:  Biochemistry       Date:  1986-04-22       Impact factor: 3.162

9.  Electron transfer kinetics in photosynthetic reaction centers embedded in polyvinyl alcohol films.

Authors:  Francesco Francia; Lisa Giachini; Gerardo Palazzo; Antonia Mallardi; Federico Boscherini; Giovanni Venturoli
Journal:  Bioelectrochemistry       Date:  2004-06       Impact factor: 5.373

10.  The electronic structure of Fe2+ in reaction centers from Rhodopseudomonas sphaeroides. II. Extended x-ray fine structure studies.

Authors:  P Eisenberger; M Y Okamura; G Feher
Journal:  Biophys J       Date:  1982-02       Impact factor: 4.033

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  1 in total

1.  Carboxylate shifts steer interquinone electron transfer in photosynthesis.

Authors:  Petko Chernev; Ivelina Zaharieva; Holger Dau; Michael Haumann
Journal:  J Biol Chem       Date:  2010-12-17       Impact factor: 5.157

  1 in total

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