Literature DB >> 17583532

Efficient calculation of exact mass isotopic distributions.

Ross K Snider1.   

Abstract

This paper presents a new method for efficiently calculating the exact masses in an isotopic distribution using a dynamic programming approach. The resulting program, isoDalton, can generate extremely high isotopic resolutions as demonstrated by a FWHM resolution of 2 x 10(11). This resolution allows very fine mass structures in isotopic distributions to be seen, even for large molecules. Since the number of exact masses grows exponentially with molecular size, only the most probable exact masses are kept, the number of which is user specified.

Mesh:

Year:  2007        PMID: 17583532      PMCID: PMC2041839          DOI: 10.1016/j.jasms.2007.05.016

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  4 in total

1.  Isotopic compositions and accurate masses of single isotopic peaks.

Authors:  Alan L Rockwood; Jordan R Van Orman; David V Dearden
Journal:  J Am Soc Mass Spectrom       Date:  2004-01       Impact factor: 3.109

2.  Reduction of chemical formulas from the isotopic peak distributions of high-resolution mass spectra.

Authors:  Stilianos G Roussis; Richard Proulx
Journal:  Anal Chem       Date:  2003-03-15       Impact factor: 6.986

3.  Efficient calculation of accurate masses of isotopic peaks.

Authors:  Alan L Rockwood; Perttu Haimi
Journal:  J Am Soc Mass Spectrom       Date:  2006-02-03       Impact factor: 3.109

4.  On the Theory of Dynamic Programming.

Authors:  R Bellman
Journal:  Proc Natl Acad Sci U S A       Date:  1952-08       Impact factor: 11.205

  4 in total
  15 in total

1.  Protein turnover quantification in a multilabeling approach: from data calculation to evaluation.

Authors:  Christian Trötschel; Stefan P Albaum; Daniel Wolff; Simon Schröder; Alexander Goesmann; Tim W Nattkemper; Ansgar Poetsch
Journal:  Mol Cell Proteomics       Date:  2012-04-06       Impact factor: 5.911

2.  An efficient method to calculate the aggregated isotopic distribution and exact center-masses.

Authors:  Jürgen Claesen; Piotr Dittwald; Tomasz Burzykowski; Dirk Valkenborg
Journal:  J Am Soc Mass Spectrom       Date:  2012-02-15       Impact factor: 3.109

3.  A hierarchical algorithm for calculating the isotopic fine structures of molecules.

Authors:  Long Li; Joshua A Kresh; N Murat Karabacak; Jennifer S Cobb; Jeffrey N Agar; Pengyu Hong
Journal:  J Am Soc Mass Spectrom       Date:  2008-08-15       Impact factor: 3.109

4.  Correcting for the effects of natural abundance in stable isotope resolved metabolomics experiments involving ultra-high resolution mass spectrometry.

Authors:  Hunter Nb Moseley
Journal:  BMC Bioinformatics       Date:  2010-03-17       Impact factor: 3.169

5.  Isotopomer analysis of lipid biosynthesis by high resolution mass spectrometry and NMR.

Authors:  Andrew N Lane; Teresa W-M Fan; Zhengzhi Xie; Hunter N B Moseley; Richard M Higashi
Journal:  Anal Chim Acta       Date:  2009-08-27       Impact factor: 6.558

6.  BRAIN 2.0: time and memory complexity improvements in the algorithm for calculating the isotope distribution.

Authors:  Piotr Dittwald; Dirk Valkenborg
Journal:  J Am Soc Mass Spectrom       Date:  2014-02-12       Impact factor: 3.109

7.  Calculation of the isotope cluster for polypeptides by probability grouping.

Authors:  Matthew T Olson; Alfred L Yergey
Journal:  J Am Soc Mass Spectrom       Date:  2008-10-17       Impact factor: 3.109

8.  Advances in structure elucidation of small molecules using mass spectrometry.

Authors:  Tobias Kind; Oliver Fiehn
Journal:  Bioanal Rev       Date:  2010-08-21

9.  Integration of untargeted metabolomics with transcriptomics reveals active metabolic pathways.

Authors:  Kyuil Cho; Bradley S Evans; B McKay Wood; Ritesh Kumar; Tobias J Erb; Benjamin P Warlick; John A Gerlt; Jonathan V Sweedler
Journal:  Metabolomics       Date:  2014-09-03       Impact factor: 4.290

10.  Computational mass spectrometry for small molecules.

Authors:  Kerstin Scheubert; Franziska Hufsky; Sebastian Böcker
Journal:  J Cheminform       Date:  2013-03-01       Impact factor: 5.514

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