Literature DB >> 17578919

Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana.

Guojun Yang1, Feng Zhang, C Nathan Hancock, Susan R Wessler.   

Abstract

An active miniature inverted repeat transposable element (MITE), mPing, was discovered by computer-assisted analysis of rice genome sequence. The mPing element is mobile in rice cell culture and in a few rice strains where it has been amplified to >1,000 copies during recent domestication. However, determination of the transposase source and characterization of the mechanism of transposition have been hampered by the high copy number of mPing and the presence of several candidate autonomous elements in the rice genome. Here, we report that mPing is active in Arabidopsis thaliana, where its transposition is catalyzed by three sources of transposase from rice: the autonomous Ping and Pong elements and by a cDNA derived from a Ping transcript. In addition to transposase, the product of a second element-encoded ORF of unknown function is also required for mPing transposition. Excision of mPing in A. thaliana is usually precise, and transposed copies usually insert into unlinked sites in the genome that are preferentially in or near genes. As such, this will be a valuable assay system for the dissection of MITE transposition and a potentially powerful tagging system for gene discovery in eukaryotes.

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Year:  2007        PMID: 17578919      PMCID: PMC1904124          DOI: 10.1073/pnas.0702080104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Kiddo, a new transposable element family closely associated with rice genes.

Authors:  G Yang; J Dong; M B Chandrasekharan; T C Hall
Journal:  Mol Genet Genomics       Date:  2001-11       Impact factor: 3.291

2.  PIFs meet Tourists and Harbingers: a superfamily reunion.

Authors:  J Jurka; V V Kapitonov
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-23       Impact factor: 11.205

3.  The MITE family heartbreaker (Hbr): molecular markers in maize.

Authors:  A M Casa; C Brouwer; A Nagel; L Wang; Q Zhang; S Kresovich; S R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

4.  Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize.

Authors:  Q Zhang; J Arbuckle; S R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-01       Impact factor: 11.205

5.  Dramatic amplification of a rice transposable element during recent domestication.

Authors:  Ken Naito; Eunyoung Cho; Guojun Yang; Matthew A Campbell; Kentaro Yano; Yutaka Okumoto; Takatoshi Tanisaka; Susan R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-13       Impact factor: 11.205

6.  Evidence that a family of miniature inverted-repeat transposable elements (MITEs) from the Arabidopsis thaliana genome has arisen from a pogo-like DNA transposon.

Authors:  C Feschotte; C Mouchès
Journal:  Mol Biol Evol       Date:  2000-05       Impact factor: 16.240

7.  P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases.

Authors:  X Zhang; C Feschotte; Q Zhang; N Jiang; W B Eggleston; S R Wessler
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-02       Impact factor: 11.205

8.  Genome analysis and strain comparison of correia repeats and correia repeat-enclosed elements in pathogenic Neisseria.

Authors:  Shi V Liu; Nigel J Saunders; Alex Jeffries; Richard F Rest
Journal:  J Bacteriol       Date:  2002-11       Impact factor: 3.490

9.  An active DNA transposon family in rice.

Authors:  Ning Jiang; Zhirong Bao; Xiaoyu Zhang; Hirohiko Hirochika; Sean R Eddy; Susan R McCouch; Susan R Wessler
Journal:  Nature       Date:  2003-01-09       Impact factor: 49.962

10.  The plant MITE mPing is mobilized in anther culture.

Authors:  Kazuhiro Kikuchi; Kazuki Terauchi; Masamitsu Wada; Hiro-Yuki Hirano
Journal:  Nature       Date:  2003-01-09       Impact factor: 49.962

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  53 in total

1.  A single-base substitution suppresses flower color mutation caused by a novel miniature inverted-repeat transposable element in gentian.

Authors:  Masahiro Nishihara; Takashi Hikage; Eri Yamada; Takashi Nakatsuka
Journal:  Mol Genet Genomics       Date:  2011-10-15       Impact factor: 3.291

2.  Miniature inverted-repeat transposable elements of Stowaway are active in potato.

Authors:  Masaki Momose; Yutaka Abe; Yoshihiro Ozeki
Journal:  Genetics       Date:  2010-07-06       Impact factor: 4.562

3.  Identification of Tf1 integration events in S. pombe under nonselective conditions.

Authors:  Kristina E Cherry; Willis E Hearn; Osborne Y K Seshie; Teresa L Singleton
Journal:  Gene       Date:  2014-03-25       Impact factor: 3.688

4.  Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genes.

Authors:  Ludivine Sinzelle; Vladimir V Kapitonov; Dawid P Grzela; Tobias Jursch; Jerzy Jurka; Zsuzsanna Izsvák; Zoltán Ivics
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-13       Impact factor: 11.205

Review 5.  DNA transposons and the evolution of eukaryotic genomes.

Authors:  Cédric Feschotte; Ellen J Pritham
Journal:  Annu Rev Genet       Date:  2007       Impact factor: 16.830

6.  Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression.

Authors:  Jesse D Hollister; Brandon S Gaut
Journal:  Genome Res       Date:  2009-05-28       Impact factor: 9.043

7.  A recently active miniature inverted-repeat transposable element, Chunjie, inserted into an operon without disturbing the operon structure in Geobacter uraniireducens Rf4.

Authors:  Yong Chen; Fengfeng Zhou; Guojun Li; Ying Xu
Journal:  Genetics       Date:  2008-07-27       Impact factor: 4.562

8.  Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome.

Authors:  Tatiana Zerjal; Johann Joets; Karine Alix; Marie-Angèle Grandbastien; Maud I Tenaillon
Journal:  Plant Mol Biol       Date:  2009-06-17       Impact factor: 4.076

9.  Different strategies to persist: the pogo-like Lemi1 transposon produces miniature inverted-repeat transposable elements or typical defective elements in different plant genomes.

Authors:  Hélène Guermonprez; Céline Loot; Josep M Casacuberta
Journal:  Genetics       Date:  2008-08-30       Impact factor: 4.562

10.  Genome-wide analysis of the Fusarium oxysporum mimp family of MITEs and mobilization of both native and de novo created mimps.

Authors:  Mara Bergemann; Olivier Lespinet; Sarrah Ben M'Barek; Marie-Josée Daboussi; Marie Dufresne
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395

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