Literature DB >> 18660544

A recently active miniature inverted-repeat transposable element, Chunjie, inserted into an operon without disturbing the operon structure in Geobacter uraniireducens Rf4.

Yong Chen1, Fengfeng Zhou, Guojun Li, Ying Xu.   

Abstract

Miniature inverted-repeat transposable elements (MITEs) are short DNA transposons with terminal inverted repeat (TIR) signals and have been extensively studied in plants and other eukaryotes. But little is known about them in eubacteria. We identified a novel and recently active MITE, Chunjie, when studying the recent duplication of an operon consisting of ABC transporters and a phosphate uptake regulator in the chromosome of Geobacter uraniireducens Rf4. Chunjie resembles the other known MITEs in many aspects, e.g., having TIR signals and direct repeats, small in size, noncoding, able to fold into a stable secondary structure, and typically inserted into A + T-rich regions. At least one case of recent transposition was observed, i.e., the insertion of Chunjie into one copy of the aforementioned operon. As far as we know, this is the first report that the insertion of a MITE does not disrupt the operon structure.

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Year:  2008        PMID: 18660544      PMCID: PMC2516098          DOI: 10.1534/genetics.108.089995

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  27 in total

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Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

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Journal:  BMC Genomics       Date:  2008-01-24       Impact factor: 3.969

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  15 in total

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3.  Integron mobilization unit as a source of mobility of antibiotic resistance genes.

Authors:  Laurent Poirel; Amélie Carrër; Johann D Pitout; Patrice Nordmann
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Review 4.  Bacterial genome instability.

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7.  Stem loop sequences specific to transposable element IS605 are found linked to lipoprotein genes in Borrelia plasmids.

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Journal:  PLoS One       Date:  2009-11-20       Impact factor: 3.240

8.  Distribution of genes and repetitive elements in the Diabrotica virgifera virgifera genome estimated using BAC sequencing.

Authors:  Brad S Coates; Analiza P Alves; Haichuan Wang; Kimberly K O Walden; B Wade French; Nicholas J Miller; Craig A Abel; Hugh M Robertson; Thomas W Sappington; Blair D Siegfried
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9.  ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins.

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10.  Normalizing electrocardiograms of both healthy persons and cardiovascular disease patients for biometric authentication.

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