Literature DB >> 17574835

The spliceosome: caught in a web of shifting interactions.

Saba Valadkhan1.   

Abstract

Splicing is a crucial, ubiquitous and highly complex step in eukaryotic gene expression. The daunting complexity of the splicing reaction, although fascinating, has severely limited our understanding of its mechanistic details. Recent advances have begun to provide exciting new insights into the dynamic interactions that govern the function of the spliceosome, the multi-megadalton complex that performs splicing. An emerging paradigm is the presence of a succession of distinct conformational states, which are stabilized by an intricate network of interactions. Recent data suggest that even subtle changes in the composition of the interaction network can result in interconversion of the different conformational states, providing opportunities for regulation and proofreading of spliceosome function. Significant progress in proteomics has elucidated the protein composition of the spliceosome at different stages of assembly. Also, the increased sophistication and resolution of cryo-electron microscopy techniques, combined with high-resolution structural studies on a smaller scale, promise to create detailed images of the global structure of the spliceosome and its main components, which in turn will provide a plethora of mechanistic insights. Overall, the past two years have seen a convergence of data from different lines of research into what promises to become a holistic picture of spliceosome function.

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Year:  2007        PMID: 17574835     DOI: 10.1016/j.sbi.2007.05.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  18 in total

1.  Identification and characterization of a short 2'-3' bond-forming ribozyme.

Authors:  Duncan J Smith; Maria M Konarska
Journal:  RNA       Date:  2008-11-24       Impact factor: 4.942

2.  Evolution of spliceosomal snRNA genes in metazoan animals.

Authors:  Manuela Marz; Toralf Kirsten; Peter F Stadler
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395

3.  Protein-free small nuclear RNAs catalyze a two-step splicing reaction.

Authors:  Saba Valadkhan; Afshin Mohammadi; Yasaman Jaladat; Sarah Geisler
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-22       Impact factor: 11.205

Review 4.  "Nought may endure but mutability": spliceosome dynamics and the regulation of splicing.

Authors:  Duncan J Smith; Charles C Query; Maria M Konarska
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

5.  A snRNP's ordered path to maturity.

Authors:  Saba Valadkhan
Journal:  Genes Dev       Date:  2011-08-01       Impact factor: 11.361

6.  A bird's-eye view of post-translational modifications in the spliceosome and their roles in spliceosome dynamics.

Authors:  Susannah L McKay; Tracy L Johnson
Journal:  Mol Biosyst       Date:  2010-07-29

7.  Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data.

Authors:  Hiroshi Nakayama; Misaki Akiyama; Masato Taoka; Yoshio Yamauchi; Yuko Nobe; Hideaki Ishikawa; Nobuhiro Takahashi; Toshiaki Isobe
Journal:  Nucleic Acids Res       Date:  2009-03-06       Impact factor: 16.971

8.  Phosphorylation of S776 and 14-3-3 binding modulate ataxin-1 interaction with splicing factors.

Authors:  Cesira de Chiara; Rajesh P Menon; Molly Strom; Toby J Gibson; Annalisa Pastore
Journal:  PLoS One       Date:  2009-12-23       Impact factor: 3.240

9.  An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes.

Authors:  Masato Taoka; Yoshio Yamauchi; Yuko Nobe; Shunpei Masaki; Hiroshi Nakayama; Hideaki Ishikawa; Nobuhiro Takahashi; Toshiaki Isobe
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

10.  Non-coding RNA annotation of the genome of Trichoplax adhaerens.

Authors:  Jana Hertel; Danielle de Jong; Manja Marz; Dominic Rose; Hakim Tafer; Andrea Tanzer; Bernd Schierwater; Peter F Stadler
Journal:  Nucleic Acids Res       Date:  2009-01-16       Impact factor: 16.971

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