Literature DB >> 15294308

A reference data set for the evaluation of medical image retrieval systems.

Henning Müller1, Antoine Rosset, Jean-Paul Vallée, François Terrier, Antoine Geissbuhler.   

Abstract

Content-based image retrieval is starting to become an increasingly important factor in medical imaging research and image management systems. Several retrieval systems and methodologies exist and are used in a large variety of applications from automatic labelling of images to diagnostic aid and image classification. Still, it is very hard to compare the performance of these systems as the used databases often contain copyrighted or private images and are thus not interchangeable between research groups, also for patient privacy. Most of the currently used databases for evaluating systems are also fairly small which is partly due to the high cost in obtaining a gold standard or ground truth that is necessary for evaluation. Several large image databases, though without a gold standard, start to be available publicly, for example by the NIH (National Institutes for Health). This article describes the creation of a large medical image database that is used in a teaching file containing more than 8,700 varied medical images. The images are anonymised and can be exchanged free of charge and copyright. Ground truth (a gold standard) has been obtained for a set of 26 images being selected as query topics for content-based query by image example. To reduce the time for the generation of ground truth, pooling methods well known from the text or information retrieval field have been used. Such a database is a good starting point for comparing the current image retrieval systems and to measure the retrieval quality, especially within the context of teaching files, image case databases and the support of teaching. For a comparison of retrieval systems for diagnostic aid, specialised image databases, including the diagnosis and a case description will need to be made available, as well, including gold standards for a proper system evaluation. A first evaluation event for image retrieval is foreseen at the 2004 CLEF conference (Cross Language Evaluation Forum) to compare text-and content-based access mechanism to images.

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Year:  2004        PMID: 15294308     DOI: 10.1016/j.compmedimag.2004.04.005

Source DB:  PubMed          Journal:  Comput Med Imaging Graph        ISSN: 0895-6111            Impact factor:   4.790


  6 in total

1.  Towards a repository for standardized medical image and signal case data annotated with ground truth.

Authors:  Thomas M Deserno; Petra Welter; Alexander Horsch
Journal:  J Digit Imaging       Date:  2012-04       Impact factor: 4.056

Review 2.  Medical Image Analysis using Convolutional Neural Networks: A Review.

Authors:  Syed Muhammad Anwar; Muhammad Majid; Adnan Qayyum; Muhammad Awais; Majdi Alnowami; Muhammad Khurram Khan
Journal:  J Med Syst       Date:  2018-10-08       Impact factor: 4.460

3.  Modeling perceptual similarity measures in CT images of focal liver lesions.

Authors:  Jessica Faruque; Daniel L Rubin; Christopher F Beaulieu; Sandy Napel
Journal:  J Digit Imaging       Date:  2013-08       Impact factor: 4.056

Review 4.  Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013.

Authors:  Jayashree Kalpathy-Cramer; Alba García Seco de Herrera; Dina Demner-Fushman; Sameer Antani; Steven Bedrick; Henning Müller
Journal:  Comput Med Imaging Graph       Date:  2014-03-27       Impact factor: 4.790

5.  Effective metadata discovery for dynamic filtering of queries to a radiology image search engine.

Authors:  Charles E Kahn
Journal:  J Digit Imaging       Date:  2007-06-09       Impact factor: 4.056

6.  Why rankings of biomedical image analysis competitions should be interpreted with care.

Authors:  Lena Maier-Hein; Matthias Eisenmann; Annika Reinke; Sinan Onogur; Marko Stankovic; Patrick Scholz; Tal Arbel; Hrvoje Bogunovic; Andrew P Bradley; Aaron Carass; Carolin Feldmann; Alejandro F Frangi; Peter M Full; Bram van Ginneken; Allan Hanbury; Katrin Honauer; Michal Kozubek; Bennett A Landman; Keno März; Oskar Maier; Klaus Maier-Hein; Bjoern H Menze; Henning Müller; Peter F Neher; Wiro Niessen; Nasir Rajpoot; Gregory C Sharp; Korsuk Sirinukunwattana; Stefanie Speidel; Christian Stock; Danail Stoyanov; Abdel Aziz Taha; Fons van der Sommen; Ching-Wei Wang; Marc-André Weber; Guoyan Zheng; Pierre Jannin; Annette Kopp-Schneider
Journal:  Nat Commun       Date:  2018-12-06       Impact factor: 14.919

  6 in total

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