Literature DB >> 17557284

PyFrag--Streamlining your reaction path analysis.

Willem-Jan Van Zeist1, Célia Fonseca Guerra, F Matthias Bickelhaupt.   

Abstract

The PyFrag program (released as PyFrag2007.01) is a "wrap-around" for the Amsterdam Density Functional (ADF) package and facilitates the extension of the fragment analysis method implemented in ADF along an entire potential energy surface. The purpose is to make analyses of reaction paths and other (in principle also multidimensional) potential energy surfaces more transparent and user-friendly. PyFrag also automates the analysis of reaction paths in terms of the extended activation strain model of chemical reactivity. (c) 2007 Wiley Periodicals, Inc. J Comput Chem, 2008.

Entities:  

Year:  2008        PMID: 17557284     DOI: 10.1002/jcc.20786

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  14 in total

1.  ExcelAutomat: a tool for systematic processing of files as applied to quantum chemical calculations.

Authors:  Jalal Z A Laloo; Nassirah Laloo; Lydia Rhyman; Ponnadurai Ramasami
Journal:  J Comput Aided Mol Des       Date:  2017-06-17       Impact factor: 3.686

2.  Understanding E2 versus SN2 Competition under Acidic and Basic Conditions.

Authors:  Lando P Wolters; Yi Ren; F Matthias Bickelhaupt
Journal:  ChemistryOpen       Date:  2014-01-29       Impact factor: 2.911

3.  Activation Strain Analysis of SN2 Reactions at C, N, O, and F Centers.

Authors:  Jan Kubelka; F Matthias Bickelhaupt
Journal:  J Phys Chem A       Date:  2017-01-20       Impact factor: 2.781

Review 4.  Analyzing Reaction Rates with the Distortion/Interaction-Activation Strain Model.

Authors:  F Matthias Bickelhaupt; Kendall N Houk
Journal:  Angew Chem Int Ed Engl       Date:  2017-07-17       Impact factor: 15.336

5.  Factors Controlling the Diels-Alder Reactivity of Hetero-1,3-Butadienes.

Authors:  Song Yu; Hans M de Bruijn; Dennis Svatunek; Trevor A Hamlin; F Matthias Bickelhaupt
Journal:  ChemistryOpen       Date:  2018-11-26       Impact factor: 2.911

6.  PyFrag 2019-Automating the exploration and analysis of reaction mechanisms.

Authors:  Xiaobo Sun; Thomas M Soini; Jordi Poater; Trevor A Hamlin; F Matthias Bickelhaupt
Journal:  J Comput Chem       Date:  2019-06-04       Impact factor: 3.376

7.  How Alkali Cations Catalyze Aromatic Diels-Alder Reactions.

Authors:  Pascal Vermeeren; Francine Brinkhuis; Trevor A Hamlin; F Matthias Bickelhaupt
Journal:  Chem Asian J       Date:  2020-03-09

8.  Nonlinear d(10)-ML2 Transition-Metal Complexes.

Authors:  Lando P Wolters; F Matthias Bickelhaupt
Journal:  ChemistryOpen       Date:  2013-05-06       Impact factor: 2.911

9.  Halogen Bonding versus Hydrogen Bonding: A Molecular Orbital Perspective.

Authors:  Lando P Wolters; F Matthias Bickelhaupt
Journal:  ChemistryOpen       Date:  2012-04-04       Impact factor: 2.911

10.  Arylic C-X Bond Activation by Palladium Catalysts: Activation Strain Analyses of Reactivity Trends.

Authors:  Pascal Vermeeren; Xiaobo Sun; F Matthias Bickelhaupt
Journal:  Sci Rep       Date:  2018-07-16       Impact factor: 4.379

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