Literature DB >> 28624971

ExcelAutomat: a tool for systematic processing of files as applied to quantum chemical calculations.

Jalal Z A Laloo1, Nassirah Laloo2, Lydia Rhyman1,3,4, Ponnadurai Ramasami5,6.   

Abstract

The processing of the input and output files of quantum chemical calculations often necessitates a spreadsheet as a key component of the workflow. Spreadsheet packages with a built-in programming language editor can automate the steps involved and thus provide a direct link between processing files and the spreadsheet. This helps to reduce user-interventions as well as the need to switch between different programs to carry out each step. The ExcelAutomat tool is the implementation of this method in Microsoft Excel (MS Excel) using the default Visual Basic for Application (VBA) programming language. The code in ExcelAutomat was adapted to work with the platform-independent open-source LibreOffice Calc, which also supports VBA. ExcelAutomat provides an interface through the spreadsheet to automate repetitive tasks such as merging input files, splitting, parsing and compiling data from output files, and generation of unique filenames. Selected extracted parameters can be retrieved as variables which can be included in custom codes for a tailored approach. ExcelAutomat works with Gaussian files and is adapted for use with other computational packages including the non-commercial GAMESS. ExcelAutomat is available as a downloadable MS Excel workbook or as a LibreOffice workbook.

Entities:  

Keywords:  Automation; Computational chemistry; Parsing data; Spreadsheet; VBA

Mesh:

Year:  2017        PMID: 28624971     DOI: 10.1007/s10822-017-0031-8

Source DB:  PubMed          Journal:  J Comput Aided Mol Des        ISSN: 0920-654X            Impact factor:   3.686


  26 in total

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Authors:  G Schaftenaar; J H Noordik
Journal:  J Comput Aided Mol Des       Date:  2000-02       Impact factor: 3.686

2.  Simulation of complex pharmacokinetic models in Microsoft Excel.

Authors:  Ingolf Meineke; Jürgen Brockmöller
Journal:  Comput Methods Programs Biomed       Date:  2007-11-05       Impact factor: 5.428

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Authors:  Willem-Jan Van Zeist; Célia Fonseca Guerra; F Matthias Bickelhaupt
Journal:  J Comput Chem       Date:  2008-01-30       Impact factor: 3.376

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Authors:  Chad J Creighton; Ankur K Nagaraja; Samir M Hanash; Martin M Matzuk; Preethi H Gunaratne
Journal:  RNA       Date:  2008-09-23       Impact factor: 4.942

5.  QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials.

Authors:  Paolo Giannozzi; Stefano Baroni; Nicola Bonini; Matteo Calandra; Roberto Car; Carlo Cavazzoni; Davide Ceresoli; Guido L Chiarotti; Matteo Cococcioni; Ismaila Dabo; Andrea Dal Corso; Stefano de Gironcoli; Stefano Fabris; Guido Fratesi; Ralph Gebauer; Uwe Gerstmann; Christos Gougoussis; Anton Kokalj; Michele Lazzeri; Layla Martin-Samos; Nicola Marzari; Francesco Mauri; Riccardo Mazzarello; Stefano Paolini; Alfredo Pasquarello; Lorenzo Paulatto; Carlo Sbraccia; Sandro Scandolo; Gabriele Sclauzero; Ari P Seitsonen; Alexander Smogunov; Paolo Umari; Renata M Wentzcovitch
Journal:  J Phys Condens Matter       Date:  2009-09-01       Impact factor: 2.333

6.  Dimeric spectra analysis in Microsoft Excel: a comparative study.

Authors:  A Ghanadzadeh Gilani; M Moghadam; M S Zakerhamidi
Journal:  Comput Methods Programs Biomed       Date:  2011-03-11       Impact factor: 5.428

7.  Monte Carlo simulation of parameter confidence intervals for non-linear regression analysis of biological data using Microsoft Excel.

Authors:  Ronald J W Lambert; Ioannis Mytilinaios; Luke Maitland; Angus M Brown
Journal:  Comput Methods Programs Biomed       Date:  2011-07-18       Impact factor: 5.428

8.  uSIMPK. An Excel for Windows-based simulation program for instruction of basic pharmacokinetics principles to pharmacy students.

Authors:  Dion R Brocks
Journal:  Comput Methods Programs Biomed       Date:  2015-04-20       Impact factor: 5.428

9.  DataPipeline: automated importing and fitting of large amounts of biophysical data.

Authors:  Damien Farrell; Jens Erik Nielsen
Journal:  J Comput Chem       Date:  2012-07-17       Impact factor: 3.376

10.  ORBKIT: A modular python toolbox for cross-platform postprocessing of quantum chemical wavefunction data.

Authors:  Gunter Hermann; Vincent Pohl; Jean Christophe Tremblay; Beate Paulus; Hans-Christian Hege; Axel Schild
Journal:  J Comput Chem       Date:  2016-04-04       Impact factor: 3.376

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Authors:  Yogesh Gawale; Lydia Rhyman; Mohamed I Elzagheid; Ponnadurai Ramasami; Nagaiyan Sekar
Journal:  J Fluoresc       Date:  2017-11-21       Impact factor: 2.217

2.  Theoretical study of a derivative of chlorophosphine with aliphatic and aromatic Grignard reagents: SN2@P or the novel SN2@Cl followed by SN2@C?

Authors:  Nandini Savoo; Lydia Rhyman; Ponnadurai Ramasami
Journal:  RSC Adv       Date:  2022-03-23       Impact factor: 3.361

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Authors:  Dhanashree Hallooman; Mar Ríos-Gutiérrez; Lydia Rhyman; Ibrahim A Alswaidan; Luis R Domingo; Ponnadurai Ramasami
Journal:  RSC Adv       Date:  2018-08-01       Impact factor: 4.036

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