Literature DB >> 15999246

The promise and peril of continuous in vitro evolution.

Glenn C Johns1, Gerald F Joyce.   

Abstract

Experimental evolution methods can be used to address and illuminate issues central to the understanding of evolutionary theory. One of the most powerful of these methods involves the in vitro evolution of nucleic acid enzymes, taking advantage of the direct relationship between the genotype of a nucleic acid sequence and the phenotype of its associated catalytic function. This review and commentary focuses on the past, present, and future potential of systems for the continuous in vitro evolution of nucleic acid enzymes as tools for modeling evolutionary processes in biology. It offers a candid appraisal of both the strengths and the limitations of these systems.

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Year:  2005        PMID: 15999246     DOI: 10.1007/s00239-004-0307-1

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  28 in total

1.  A molecular description of the evolution of resistance.

Authors:  P Ordoukhanian; G F Joyce
Journal:  Chem Biol       Date:  1999-12

2.  Replicability and recurrence in the experimental evolution of a group I ribozyme.

Authors:  M M Hanczyc; R L Dorit
Journal:  Mol Biol Evol       Date:  2000-07       Impact factor: 16.240

3.  Continuous in vitro evolution of a ribozyme that catalyzes three successive nucleotidyl addition reactions.

Authors:  Kathleen E McGinness; Martin C Wright; Gerald F Joyce
Journal:  Chem Biol       Date:  2002-05

4.  Directed evolution of an RNA enzyme.

Authors:  A A Beaudry; G F Joyce
Journal:  Science       Date:  1992-07-31       Impact factor: 47.728

5.  Continuous in vitro evolution of catalytic function.

Authors:  M C Wright; G F Joyce
Journal:  Science       Date:  1997-04-25       Impact factor: 47.728

6.  Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia.

Authors:  R K Saiki; S Scharf; F Faloona; K B Mullis; G T Horn; H A Erlich; N Arnheim
Journal:  Science       Date:  1985-12-20       Impact factor: 47.728

7.  In vitro selection of bacteriophage Q-beta ribonucleic acid variants resistant to ethidium bromide.

Authors:  R Saffhill; H Schneider-Bernloehr; L E Orgel; S Spiegelman
Journal:  J Mol Biol       Date:  1970-08       Impact factor: 5.469

8.  New reactions catalyzed by a group II intron ribozyme with RNA and DNA substrates.

Authors:  M Mörl; I Niemer; C Schmelzer
Journal:  Cell       Date:  1992-09-04       Impact factor: 41.582

9.  Isolation of new ribozymes from a large pool of random sequences [see comment].

Authors:  D P Bartel; J W Szostak
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

10.  Man-made cell-like compartments for molecular evolution.

Authors:  D S Tawfik; A D Griffiths
Journal:  Nat Biotechnol       Date:  1998-07       Impact factor: 54.908

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  12 in total

1.  Accumulation of deleterious mutations in small abiotic populations of RNA.

Authors:  Steven J Soll; Carolina Díaz Arenas; Niles Lehman
Journal:  Genetics       Date:  2006-11-16       Impact factor: 4.562

2.  Evolutionary self-organization in complex fluids.

Authors:  John S McCaskill; Norman H Packard; Steen Rasmussen; Mark A Bedau
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

3.  Emergence of a fast-reacting ribozyme that is capable of undergoing continuous evolution.

Authors:  Sarah B Voytek; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-18       Impact factor: 11.205

4.  Question 5: on the chemical reality of the RNA world.

Authors:  Davide De Lucrezia; Fabrizio Anella; Cristiano Chiarabelli
Journal:  Orig Life Evol Biosph       Date:  2007-06-27       Impact factor: 1.950

5.  Niche partitioning in the coevolution of 2 distinct RNA enzymes.

Authors:  Sarah B Voytek; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-29       Impact factor: 11.205

6.  Summary statistics of neutral mutations in longitudinal DNA samples.

Authors:  Xiaoming Liu; Yun-Xin Fu
Journal:  Theor Popul Biol       Date:  2008-05-05       Impact factor: 1.570

7.  Optimization of DNA polymerase mutation rates during bacterial evolution.

Authors:  Ern Loh; Jesse J Salk; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-28       Impact factor: 11.205

8.  Identification of the Same Na(+)-Specific DNAzyme Motif from Two In Vitro Selections Under Different Conditions.

Authors:  Seyed-Fakhreddin Torabi; Yi Lu
Journal:  J Mol Evol       Date:  2015-11-17       Impact factor: 2.395

Review 9.  In vivo continuous directed evolution.

Authors:  Ahmed H Badran; David R Liu
Journal:  Curr Opin Chem Biol       Date:  2014-11-07       Impact factor: 8.822

10.  Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome.

Authors:  Daniel P Riordan; Daniel Herschlag; Patrick O Brown
Journal:  Nucleic Acids Res       Date:  2010-10-18       Impact factor: 16.971

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