Literature DB >> 17537922

Inducible XIST-dependent X-chromosome inactivation in human somatic cells is reversible.

Jennifer C Chow1, Lisa L Hall, Sarah E L Baldry, Nancy P Thorogood, Jeanne B Lawrence, Carolyn J Brown.   

Abstract

During embryogenesis, the XIST RNA is expressed from and localizes to one X chromosome in females and induces chromosome-wide silencing. Although many changes to inactive X heterochromatin are known, the functional relationships between different modifications are not well understood, and studies of the initiation of X-inactivation have been largely confined to mouse. We now present a model system for human XIST RNA function in which induction of an XIST cDNA in somatic cells results in localized XIST RNA and transcriptional silencing. Chromatin immunoprecipitation and immunohistochemistry shows that this silencing need only be accompanied by a subset of heterochromatic marks and that these can differ between integration sites. Surprisingly, silencing is XIST-dependent, remaining reversible over extended periods. Deletion analysis demonstrates that the first exon of human XIST is sufficient for both transcript localization and the induction of silencing and that, unlike the situation in mice, the conserved repeat region is essential for both functions. In addition to providing mechanistic insights into chromosome regulation and formation of facultative heterochromatin, this work provides a tractable model system for the study of chromosome silencing and suggests key differences from mouse embryonic X-inactivation.

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Year:  2007        PMID: 17537922      PMCID: PMC1891207          DOI: 10.1073/pnas.0610946104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation.

Authors:  A Wutz; R Jaenisch
Journal:  Mol Cell       Date:  2000-04       Impact factor: 17.970

2.  Chromosomal silencing and localization are mediated by different domains of Xist RNA.

Authors:  Anton Wutz; Theodore P Rasmussen; Rudolf Jaenisch
Journal:  Nat Genet       Date:  2002-01-07       Impact factor: 38.330

3.  PNA interference mapping demonstrates functional domains in the noncoding RNA Xist.

Authors:  A Beletskii; Y K Hong; J Pehrson; M Egholm; W M Strauss
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

4.  An ectopic human XIST gene can induce chromosome inactivation in postdifferentiation human HT-1080 cells.

Authors:  Lisa L Hall; Meg Byron; Kosuke Sakai; Laura Carrel; Huntington F Willard; Jeanne B Lawrence
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-18       Impact factor: 11.205

5.  Molecular and cytogenetic analysis of the spreading of X inactivation in X;autosome translocations.

Authors:  Andrew J Sharp; Hugh T Spotswood; David O Robinson; Bryan M Turner; Patricia A Jacobs
Journal:  Hum Mol Genet       Date:  2002-12-01       Impact factor: 6.150

6.  The spreading of X inactivation into autosomal material of an x;autosome translocation: evidence for a difference between autosomal and X-chromosomal DNA.

Authors:  W M White; H F Willard; D L Van Dyke; D J Wolff
Journal:  Am J Hum Genet       Date:  1998-07       Impact factor: 11.025

7.  Histones H3/H4 form a tight complex with the inner nuclear membrane protein LBR and heterochromatin protein 1.

Authors:  H Polioudaki; N Kourmouli; V Drosou; A Bakou; P A Theodoropoulos; P B Singh; T Giannakouros; S D Georgatos
Journal:  EMBO Rep       Date:  2001-09-24       Impact factor: 8.807

8.  Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine.

Authors:  Corinne Chureau; Marine Prissette; Agnès Bourdet; Valérie Barbe; Laurence Cattolico; Louis Jones; André Eggen; Philip Avner; Laurent Duret
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

9.  Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence.

Authors:  T B Nesterova; S Y Slobodyanyuk; E A Elisaphenko; A I Shevchenko; C Johnston; M E Pavlova; I B Rogozin; N N Kolesnikov; N Brockdorff; S M Zakian
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

10.  Unbalanced X;autosome translocations provide evidence for sequence specificity in the association of XIST RNA with chromatin.

Authors:  Lisa L Hall; Christine M Clemson; Meg Byron; Karen Wydner; Jeanne B Lawrence
Journal:  Hum Mol Genet       Date:  2002-12-01       Impact factor: 6.150

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  37 in total

Review 1.  Nuclear organization and dosage compensation.

Authors:  Jennifer C Chow; Edith Heard
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-10-13       Impact factor: 10.005

2.  D-repeat in the XIST gene is required for X chromosome inactivation.

Authors:  Qingyan Lv; Lin Yuan; Yuning Song; Tingting Sui; Zhanjun Li; Liangxue Lai
Journal:  RNA Biol       Date:  2016       Impact factor: 4.652

3.  YY1 tethers Xist RNA to the inactive X nucleation center.

Authors:  Yesu Jeon; Jeannie T Lee
Journal:  Cell       Date:  2011-07-08       Impact factor: 41.582

Review 4.  XIST RNA and architecture of the inactive X chromosome: implications for the repeat genome.

Authors:  L L Hall; J B Lawrence
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2011-03-29

Review 5.  Progress in understanding the molecular mechanism of Xist RNA function through genetics.

Authors:  Asun Monfort; Anton Wutz
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-11-05       Impact factor: 6.237

6.  Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.

Authors:  Mihaela Pertea; Daehwan Kim; Geo M Pertea; Jeffrey T Leek; Steven L Salzberg
Journal:  Nat Protoc       Date:  2016-08-11       Impact factor: 13.491

7.  Active chromatin marks are retained on X chromosomes lacking gene or repeat silencing despite XIST/Xist expression in somatic cell hybrids.

Authors:  Nancy P Thorogood; Carolyn J Brown
Journal:  PLoS One       Date:  2010-05-24       Impact factor: 3.240

8.  Identification of regulatory elements flanking human XIST reveals species differences.

Authors:  Samuel C Chang; Carolyn J Brown
Journal:  BMC Mol Biol       Date:  2010-03-08       Impact factor: 2.946

9.  SATB1 defines the developmental context for gene silencing by Xist in lymphoma and embryonic cells.

Authors:  Ruben Agrelo; Abdallah Souabni; Maria Novatchkova; Christian Haslinger; Martin Leeb; Vukoslav Komnenovic; Hiroyuki Kishimoto; Lionel Gresh; Terumi Kohwi-Shigematsu; Lukas Kenner; Anton Wutz
Journal:  Dev Cell       Date:  2009-04       Impact factor: 12.270

10.  X chromosome inactivation and Xist evolution in a rodent lacking LINE-1 activity.

Authors:  Michael A Cantrell; Bryan C Carstens; Holly A Wichman
Journal:  PLoS One       Date:  2009-07-15       Impact factor: 3.240

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