Literature DB >> 175353

Specific spin-labeling of transfer ribonucleic acid molecules.

M Caron, H Dugas.   

Abstract

The spin labels anhydride (ASL), bromoacetamide (BSL) and carbodiimide (CSL) were used to label selectively tRNAGlu, tRNA fMet and tRNAPhe from E. coli. The preparation and characterization of the sites of labeling of eight new spin-labeled tRNAs are described. The sites of labeling are: s2U using ASL, BSL and CLS and tRNAGlu; s4U using ASL and BSL on tRNAfMet and tRNAPhe; U-37 with CSL on tRNfMet; U-33 with CSL on tRNAPhe. The rare base X at position 47 of tRNAPhe has been acylated with a spin-labeled N-hydroxysuccinimide (HSL). The 3'end of unfractionated tRNA molecules has been chemically modified to a morpholino spin-labeled analogue (MSL). Their respective e.s.r. spectra are reported and discussed.

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Year:  1976        PMID: 175353      PMCID: PMC342874          DOI: 10.1093/nar/3.1.19

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  The sequence of phenylalanine tRNA from E. coli.

Authors:  B G. Barrell; F Sanger
Journal:  FEBS Lett       Date:  1969-06       Impact factor: 4.124

2.  CHROMATOGRAPHY OF MIXED OLIGONUCLEOTIDES ON DEAE-SEPHADEX.

Authors:  G W RUSHIZKY; E M BARTOS; H A SOBER
Journal:  Biochemistry       Date:  1964-05       Impact factor: 3.162

3.  3-(3-amino-3-carboxy-n-propyl)uridine. The structure of the nucleoside in Escherichia coli transfer ribonucleic acid that reacts with phenoxyacetoxysuccinimide.

Authors:  S Friedman; H J Li; K Nakanishi; G Van Lear
Journal:  Biochemistry       Date:  1974-07-02       Impact factor: 3.162

4.  Selective modification of cytidine and uridine residues in Escherichia coli formylmethionine transfer ribonucleic acid.

Authors:  S E Chang
Journal:  J Mol Biol       Date:  1973-04-15       Impact factor: 5.469

5.  The nucleotide sequence of N-formyl-methionyl-transfer RNA. Products of complete digestion with ribonuclease T-1 and pancreatic ribonuclease and derivation of their sequences.

Authors:  S K Dube; K A Marcker; B F Clark; S Cory
Journal:  Eur J Biochem       Date:  1969-03

6.  Primary sequence of tRNA-Val-1 from Escherichia coli B. II. Isolation of large fragments by limited digestion with RNases, and overlapping of fragments to reduce the total primary sequence.

Authors:  F Kimura; F Harada; S Nishimura
Journal:  Biochemistry       Date:  1971-08-17       Impact factor: 3.162

7.  The reversible chemical modification of uracil, thymine, and guanine nucleotides and the modification of the action of ribonuclease on ribonucleic acid.

Authors:  N W Ho; P T Gilham
Journal:  Biochemistry       Date:  1967-12       Impact factor: 3.162

8.  Spin-labeled transfer RNA.

Authors:  B M Hoffman; P Schofield; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1969-04       Impact factor: 11.205

9.  Three-dimensional structure of yeast phenylalanine transfer RNA: folding of the polynucleotide chain.

Authors:  S H Kim; G J Quigley; F L Suddath; A McPherson; D Sneden; J J Kim; J Weinzierl; A Rich
Journal:  Science       Date:  1973-01-19       Impact factor: 47.728

10.  The mechanism of action of ribonuclease.

Authors:  G C Roberts; E A Dennis; D H Meadows; J S Cohen; O Jardetzky
Journal:  Proc Natl Acad Sci U S A       Date:  1969-04       Impact factor: 11.205

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  11 in total

Review 1.  Site-directed spin labeling studies on nucleic acid structure and dynamics.

Authors:  Glenna Z Sowa; Peter Z Qin
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2008

2.  Impact of spin label rigidity on extent and accuracy of distance information from PRE data.

Authors:  K A Schnorr; D B Gophane; C Helmling; E Cetiner; K Pasemann; B Fürtig; A Wacker; N S Qureshi; M Gränz; D Barthelmes; H R A Jonker; E Stirnal; S Th Sigurdsson; H Schwalbe
Journal:  J Biomol NMR       Date:  2017-05-12       Impact factor: 2.835

3.  A spin label study of the thermal unfolding of secondary and tertiary structure in E. colic transfer RNAs.

Authors:  M Caron; H Dugas
Journal:  Nucleic Acids Res       Date:  1976-01       Impact factor: 16.971

Review 4.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

Authors:  Qing Miao; Christoph Nitsche; Henry Orton; Mark Overhand; Gottfried Otting; Marcellus Ubbink
Journal:  Chem Rev       Date:  2022-01-27       Impact factor: 72.087

5.  CD spectra of 5-methyl-2-thiouridine in tRNA-Met-f from an extreme thermophile.

Authors:  K Watanabe; T Oshima; S Nishimura
Journal:  Nucleic Acids Res       Date:  1976-07       Impact factor: 16.971

6.  Spin-labeled polyribonucleotides.

Authors:  A I Petrov; B I Sukhorukov
Journal:  Nucleic Acids Res       Date:  1980-09-25       Impact factor: 16.971

7.  Covalent attachment of fluorescent probes to the X-base of Escherichia coli phenylalanine transfer ribonucleic acid.

Authors:  P W Schiller; A N Schechter
Journal:  Nucleic Acids Res       Date:  1977-07       Impact factor: 16.971

8.  Use of specific chemical reagents for detection of modified nucleotides in RNA.

Authors:  Isabelle Behm-Ansmant; Mark Helm; Yuri Motorin
Journal:  J Nucleic Acids       Date:  2011-04-13

Review 9.  Detection of nucleic acid modifications by chemical reagents.

Authors:  Matthias Heiss; Stefanie Kellner
Journal:  RNA Biol       Date:  2016-11-30       Impact factor: 4.652

10.  A facile method for attaching nitroxide spin labels at the 5' terminus of nucleic acids.

Authors:  Gian Paola G Grant; Peter Z Qin
Journal:  Nucleic Acids Res       Date:  2007-05-21       Impact factor: 16.971

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