Literature DB >> 17530863

Orientation and motion of tryptophan interfacial anchors in membrane-spanning peptides.

Patrick C A van der Wel1, Nicole D Reed, Denise V Greathouse, Roger E Koeppe.   

Abstract

The tryptophans of integral membrane proteins have been suggested to play specific roles as "interfacial anchors", based on their preference for a location near the lipid head groups. Still, the underlying mechanism behind this behavior remains unclear. NMR experiments can provide an important tool to study this interaction in an actual bilayer environment. Here solid-state deuterium nuclear magnetic resonance was used to study the tryptophans in membrane-spanning model peptides from the WALP family (acetyl-GWW(LA)nWWA-ethanolamide with n = 5 and 6.5) in samples of mechanically aligned dimyristoylphosphatidylcholine (DMPC) bilayers. The data indicate that the tryptophans near the C-terminal end of the peptide display a significantly different behavior from those near the N-terminus. This is reflected prominently in a large difference in the motion experienced by the indoles at either end of the peptide, highlighting the directionality of the helix. Nevertheless, our observations indicate high levels of motional freedom for all tryptophans in these membrane spanning domains that exceed the dynamics for the helix itself. These observations signify that steric and dynamic features of the polypeptide context modulate the tryptophan anchoring in the membrane interface. Measurements of WALP19 in the ether-linked DMPC analogue ditetradecylphosphatidylcholine (missing the lipid carbonyls) show very similar Trp dynamics and suggest similar orientations for some or all of the tryptophans. This suggests that the lipid acyl chain carbonyls play at most a minor role in the anchoring interaction between these Trp residues and the DMPC interfacial region.

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Year:  2007        PMID: 17530863      PMCID: PMC2532949          DOI: 10.1021/bi700082v

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


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3.  Optimizing oriented planar-supported lipid samples for solid-state protein NMR.

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5.  Membrane partitioning: distinguishing bilayer effects from the hydrophobic effect.

Authors:  W C Wimley; S H White
Journal:  Biochemistry       Date:  1993-06-29       Impact factor: 3.162

6.  Tryptophans in membrane proteins: indole ring orientations and functional implications in the gramicidin channel.

Authors:  W Hu; K C Lee; T A Cross
Journal:  Biochemistry       Date:  1993-07-13       Impact factor: 3.162

7.  Molecular ordering of interfacially localized tryptophan analogs in ester- and ether-lipid bilayers studied by 2H-NMR.

Authors:  S Persson; J A Killian; G Lindblom
Journal:  Biophys J       Date:  1998-09       Impact factor: 4.033

8.  Tryptophan dynamics and structural refinement in a lipid bilayer environment: solid state NMR of the gramicidin channel.

Authors:  W Hu; N D Lazo; T A Cross
Journal:  Biochemistry       Date:  1995-10-31       Impact factor: 3.162

9.  Hydrophobic mismatch between helices and lipid bilayers.

Authors:  Thomas M Weiss; Patrick C A van der Wel; J Antoinette Killian; Roger E Koeppe; Huey W Huang
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

10.  The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology.

Authors:  G Heijne
Journal:  EMBO J       Date:  1986-11       Impact factor: 11.598

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Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

Review 2.  Orientation and dynamics of transmembrane peptides: the power of simple models.

Authors:  Andrea Holt; J Antoinette Killian
Journal:  Eur Biophys J       Date:  2009-12-18       Impact factor: 1.733

3.  A Conserved Residue Cluster That Governs Kinetics of ATP-dependent Gating of Kir6.2 Potassium Channels.

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Journal:  J Biol Chem       Date:  2015-05-01       Impact factor: 5.157

4.  Tyrosine replacing tryptophan as an anchor in GWALP peptides.

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Journal:  Biochemistry       Date:  2012-03-05       Impact factor: 3.162

5.  Properties of membrane-incorporated WALP peptides that are anchored on only one end.

Authors:  Johanna M Rankenberg; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-12-03       Impact factor: 3.162

6.  Canonical azimuthal rotations and flanking residues constrain the orientation of transmembrane helices.

Authors:  Orlando L Sánchez-Muñoz; Erik Strandberg; E Esteban-Martín; Stephan L Grage; Anne S Ulrich; Jesús Salgado
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7.  Single tryptophan and tyrosine comparisons in the N-terminal and C-terminal interface regions of transmembrane GWALP peptides.

Authors:  Nicholas J Gleason; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  J Phys Chem B       Date:  2013-10-29       Impact factor: 2.991

8.  Helical distortion in tryptophan- and lysine-anchored membrane-spanning alpha-helices as a function of hydrophobic mismatch: a solid-state deuterium NMR investigation using the geometric analysis of labeled alanines method.

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Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

Review 9.  Coarse grained molecular dynamics simulations of transmembrane protein-lipid systems.

Authors:  Peter Spijker; Bram van Hoof; Michel Debertrand; Albert J Markvoort; Nagarajan Vaidehi; Peter A J Hilbers
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Review 10.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

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