Literature DB >> 17530397

A simple and rapid method for preserving RNA of aquatic invertebrates for ecotoxicogenomics.

Lars-Henrik Heckmann1, Anthony Bouetard, Christopher J Hill, Richard M Sibly, Amanda Callaghan.   

Abstract

Here we describe a novel, inexpensive and simple method for preserving RNA that reduces handling stress in aquatic invertebrates following ecotoxicogenomic experimentation. The application of the method is based on transcriptomic experiments conducted on Daphnia magna, but may easily be applied on a range of other aquatic organisms of a particular size with e.g. amphipod Gammarus pulex representing an upper size limit. We explain in detail how to apply this new method, named the "Cylindrical Sieve (CS) system", and highlight its advantages and disadvantages.

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Year:  2007        PMID: 17530397     DOI: 10.1007/s10646-007-0148-y

Source DB:  PubMed          Journal:  Ecotoxicology        ISSN: 0963-9292            Impact factor:   2.935


  7 in total

Review 1.  Gene expression profiling in ecotoxicology.

Authors:  Terry W Snell; Sara E Brogdon; Michael B Morgan
Journal:  Ecotoxicology       Date:  2003-12       Impact factor: 2.823

Review 2.  Ecotoxicogenomics: the challenge of integrating genomics into aquatic and terrestrial ecotoxicology.

Authors:  Jason R Snape; Steve J Maund; Daniel B Pickford; Thomas H Hutchinson
Journal:  Aquat Toxicol       Date:  2004-04-14       Impact factor: 4.964

3.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

4.  Molecular impact of propiconazole on Daphnia magna using a reproduction-related cDNA array.

Authors:  Anneleen Soetaert; Lotte N Moens; Karlijn Van der Ven; Koen Van Leemput; Bart Naudts; Ronny Blust; Wim M De Coen
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2005-11-28       Impact factor: 3.228

5.  Kinetic PCR analysis: real-time monitoring of DNA amplification reactions.

Authors:  R Higuchi; C Fockler; G Dollinger; R Watson
Journal:  Biotechnology (N Y)       Date:  1993-09

6.  Expression of target and reference genes in Daphnia magna exposed to ibuprofen.

Authors:  Lars-Henrik Heckmann; Richard Connon; Thomas H Hutchinson; Steve J Maund; Richard M Sibly; Amanda Callaghan
Journal:  BMC Genomics       Date:  2006-07-07       Impact factor: 3.969

7.  Gene expression in the brain and kidney of rainbow trout in response to handling stress.

Authors:  Aleksei Krasnov; Heikki Koskinen; Petri Pehkonen; Caird E Rexroad; Sergey Afanasyev; Hannu Mölsä
Journal:  BMC Genomics       Date:  2005-01-06       Impact factor: 3.969

  7 in total
  3 in total

1.  Assessment of RNA extraction protocols from cladocerans.

Authors:  Muhammad Raznisyafiq Razak; Ahmad Zaharin Aris; Fatimah Md Yusoff; Zetty Norhana Balia Yusof; Sang Don Kim; Kyoung Woong Kim
Journal:  PLoS One       Date:  2022-04-26       Impact factor: 3.752

2.  Reproduction recovery of the crustacean Daphnia magna after chronic exposure to ibuprofen.

Authors:  Yuya Hayashi; Lars-Henrik Heckmann; Amanda Callaghan; Richard M Sibly
Journal:  Ecotoxicology       Date:  2008-01-24       Impact factor: 2.823

3.  Systems biology meets stress ecology: linking molecular and organismal stress responses in Daphnia magna.

Authors:  Lars-Henrik Heckmann; Richard M Sibly; Richard Connon; Helen L Hooper; Thomas H Hutchinson; Steve J Maund; Christopher J Hill; Anthony Bouetard; Amanda Callaghan
Journal:  Genome Biol       Date:  2008-02-21       Impact factor: 13.583

  3 in total

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