Literature DB >> 17525150

Mixture models and exploratory analysis in networks.

M E J Newman1, E A Leicht.   

Abstract

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding challenges in the study of complex systems. Here we describe a general technique for detecting structural features in large-scale network data that works by dividing the nodes of a network into classes such that the members of each class have similar patterns of connection to other nodes. Using the machinery of probabilistic mixture models and the expectation-maximization algorithm, we show that it is possible to detect, without prior knowledge of what we are looking for, a very broad range of types of structure in networks. We give a number of examples demonstrating how the method can be used to shed light on the properties of real-world networks, including social and information networks.

Mesh:

Year:  2007        PMID: 17525150      PMCID: PMC1887592          DOI: 10.1073/pnas.0610537104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  10 in total

1.  Dynamical and correlation properties of the internet.

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Journal:  Phys Rev Lett       Date:  2001-11-28       Impact factor: 9.161

Review 2.  Community structure in social and biological networks.

Authors:  M Girvan; M E J Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

3.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

4.  Network bipartivity.

Authors:  Petter Holme; Fredrik Liljeros; Christofer R Edling; Beom Jun Kim
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-07

5.  Assortative mixing in networks.

Authors:  M E J Newman
Journal:  Phys Rev Lett       Date:  2002-10-28       Impact factor: 9.161

6.  An assessment of preferential attachment as a mechanism for human sexual network formation.

Authors:  James Holland Jones; Mark S Handcock
Journal:  Proc Biol Sci       Date:  2003-06-07       Impact factor: 5.349

7.  Detecting fuzzy community structures in complex networks with a Potts model.

Authors:  Jörg Reichardt; Stefan Bornholdt
Journal:  Phys Rev Lett       Date:  2004-11-15       Impact factor: 9.161

8.  Uncovering the overlapping community structure of complex networks in nature and society.

Authors:  Gergely Palla; Imre Derényi; Illés Farkas; Tamás Vicsek
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

9.  Community detection as an inference problem.

Authors:  M B Hastings
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-09-15

10.  Collective dynamics of 'small-world' networks.

Authors:  D J Watts; S H Strogatz
Journal:  Nature       Date:  1998-06-04       Impact factor: 49.962

  10 in total
  43 in total

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2.  Circular representation of human cortical networks for subject and population-level connectomic visualization.

Authors:  Andrei Irimia; Micah C Chambers; Carinna M Torgerson; John D Van Horn
Journal:  Neuroimage       Date:  2012-01-28       Impact factor: 6.556

3.  Bayesian approach to network modularity.

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4.  Efficient discovery of overlapping communities in massive networks.

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5.  Assessing the relevance of node features for network structure.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-01       Impact factor: 11.205

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7.  A nonparametric view of network models and Newman-Girvan and other modularities.

Authors:  Peter J Bickel; Aiyou Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-23       Impact factor: 11.205

8.  Community extraction for social networks.

Authors:  Yunpeng Zhao; Elizaveta Levina; Ji Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-18       Impact factor: 11.205

Review 9.  The structure and dynamics of multilayer networks.

Authors:  S Boccaletti; G Bianconi; R Criado; C I Del Genio; J Gómez-Gardeñes; M Romance; I Sendiña-Nadal; Z Wang; M Zanin
Journal:  Phys Rep       Date:  2014-07-10       Impact factor: 25.600

10.  Dynamic networks from hierarchical bayesian graph clustering.

Authors:  Yongjin Park; Cristopher Moore; Joel S Bader
Journal:  PLoS One       Date:  2010-01-11       Impact factor: 3.240

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