Literature DB >> 18583478

Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code.

Shalev Itzkovitz1, Leehod Baruch, Ehud Shapiro, Eran Segal.   

Abstract

The nervous system contains trillions of neurons, each forming thousands of synaptic connections. It has been suggested that this complex connectivity is determined by a synaptic "adhesive code," where connections are dictated by a variable set of cell surface proteins, combinations of which form neuronal addresses. The estimated number of neuronal addresses is orders of magnitude smaller than the number of neurons. Here, we show that the limited number of addresses dictates constraints on the possible neuronal network topologies. We show that to encode arbitrary networks, in which each neuron can potentially connect to any other neuron, the number of neuronal addresses needed scales linearly with network size. In contrast, the number of addresses needed to encode the wiring of geometric networks grows only as the square root of network size. The more efficient encoding in geometric networks is achieved through the reutilization of the same addresses in physically independent portions of the network. We also find that ordered geometric networks, in which the same connectivity patterns are iterated throughout the network, further reduce the required number of addresses. We demonstrate our findings using simulated networks and the C. elegans neuronal network. Geometric neuronal connectivity with recurring connectivity patterns have been suggested to confer an evolutionary advantage by saving biochemical resources on the one hand and reutilizing functionally efficient neuronal circuits. Our study suggests an additional advantage of these prominent topological features--the facilitation of the ability to genetically encode neuronal networks given constraints on the number of addresses.

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Year:  2008        PMID: 18583478      PMCID: PMC2453736          DOI: 10.1073/pnas.0712207105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

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2.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

3.  Aging and the human neocortex.

Authors:  Bente Pakkenberg; Dorte Pelvig; Lisbeth Marner; Mads J Bundgaard; Hans Jørgen G Gundersen; Jens R Nyengaard; Lisbeth Regeur
Journal:  Exp Gerontol       Date:  2003 Jan-Feb       Impact factor: 4.032

4.  Specificity of cell-cell adhesion by classical cadherins: Critical role for low-affinity dimerization through beta-strand swapping.

Authors:  Chien Peter Chen; Shoshana Posy; Avinoam Ben-Shaul; Lawrence Shapiro; Barry H Honig
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-03       Impact factor: 11.205

5.  Monoallelic yet combinatorial expression of variable exons of the protocadherin-alpha gene cluster in single neurons.

Authors:  Shigeyuki Esumi; Naoki Kakazu; Yusuke Taguchi; Teruyoshi Hirayama; Ayako Sasaki; Takahiro Hirabayashi; Tsuyoshi Koide; Takashi Kitsukawa; Shun Hamada; Takeshi Yagi
Journal:  Nat Genet       Date:  2005-01-09       Impact factor: 38.330

6.  Computational inference of the molecular logic for synaptic connectivity in C. elegans.

Authors:  Vinay Varadan; David M Miller; Dimitris Anastassiou
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

Review 7.  The role and expression of the protocadherin-alpha clusters in the CNS.

Authors:  Teruyoshi Hirayama; Takeshi Yagi
Journal:  Curr Opin Neurobiol       Date:  2006-05-11       Impact factor: 6.627

8.  Mixture models and exploratory analysis in networks.

Authors:  M E J Newman; E A Leicht
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-24       Impact factor: 11.205

9.  Identification of long-range regulatory elements in the protocadherin-alpha gene cluster.

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-15       Impact factor: 11.205

10.  Motifs in brain networks.

Authors:  Olaf Sporns; Rolf Kötter
Journal:  PLoS Biol       Date:  2004-10-26       Impact factor: 8.029

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  5 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-16       Impact factor: 11.205

2.  Is universal coverage good for neurons?

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Journal:  Neuron       Date:  2010-04-15       Impact factor: 17.173

3.  Mesoscopic organization reveals the constraints governing Caenorhabditis elegans nervous system.

Authors:  Raj Kumar Pan; Nivedita Chatterjee; Sitabhra Sinha
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4.  Self-organizing circuit assembly through spatiotemporally coordinated neuronal migration within geometric constraints.

Authors:  Yi Sun; Zhuo Huang; Kaixuan Yang; Wenwen Liu; Yunyan Xie; Bo Yuan; Wei Zhang; Xingyu Jiang
Journal:  PLoS One       Date:  2011-11-22       Impact factor: 3.240

Review 5.  Wiring the Brain by Clustered Protocadherin Neural Codes.

Authors:  Qiang Wu; Zhilian Jia
Journal:  Neurosci Bull       Date:  2020-09-17       Impact factor: 5.271

  5 in total

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