Literature DB >> 17501260

Fast computation of many-particle hydrodynamic and electrostatic interactions in a confined geometry.

Juan P Hernández-Ortiz1, Juan J de Pablo, Michael D Graham.   

Abstract

An O(N) method is presented for calculation of hydrodynamic or electrostatic interactions between N point particles in a confined geometry. This approach splits point forces or sources into a local contribution for which rapidly decaying free-space analytical solutions to the Stokes or Poisson equations are used, and a global contribution whose effect is determined numerically using a fast iterative method. The scheme is applied to Brownian dynamics simulations of flowing confined polymer solutions, and the effects of concentration on hydrodynamically induced migration phenomena are illustrated.

Entities:  

Year:  2007        PMID: 17501260     DOI: 10.1103/PhysRevLett.98.140602

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  10 in total

1.  Effects of confinement on models of intracellular macromolecular dynamics.

Authors:  Edmond Chow; Jeffrey Skolnick
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-16       Impact factor: 11.205

2.  Presentation of large DNA molecules for analysis as nanoconfined dumbbells.

Authors:  Kristy L Kounovsky-Shafer; Juan P Hernández-Ortiz; Kyubong Jo; Theo Odijk; Juan J de Pablo; David C Schwartz
Journal:  Macromolecules       Date:  2013-10-22       Impact factor: 5.985

3.  Dynamic simulation of concentrated macromolecular solutions with screened long-range hydrodynamic interactions: algorithm and limitations.

Authors:  Tadashi Ando; Edmond Chow; Jeffrey Skolnick
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

4.  Krylov subspace methods for computing hydrodynamic interactions in brownian dynamics simulations.

Authors:  Tadashi Ando; Edmond Chow; Yousef Saad; Jeffrey Skolnick
Journal:  J Chem Phys       Date:  2012-08-14       Impact factor: 3.488

5.  Motion of an elastic capsule in a constricted microchannel.

Authors:  Cecilia Rorai; Antoine Touchard; Lailai Zhu; Luca Brandt
Journal:  Eur Phys J E Soft Matter       Date:  2015-05-26       Impact factor: 1.890

6.  Self-consistent description of electrokinetic phenomena in particle-based simulations.

Authors:  Juan P Hernández-Ortiz; Juan J de Pablo
Journal:  J Chem Phys       Date:  2015-07-07       Impact factor: 3.488

7.  Modeling the relaxation of internal DNA segments during genome mapping in nanochannels.

Authors:  Aashish Jain; Julian Sheats; Jeffrey G Reifenberger; Han Cao; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2016-10-13       Impact factor: 2.800

8.  Hydrodynamics of DNA confined in nanoslits and nanochannels.

Authors:  Kevin D Dorfman; Damini Gupta; Aashish Jain; Abhiram Muralidhar; Douglas R Tree
Journal:  Eur Phys J Spec Top       Date:  2014-12-01       Impact factor: 2.707

9.  The Fluid Mechanics of Genome Mapping.

Authors:  Kevin D Dorfman
Journal:  AIChE J       Date:  2013-02-01       Impact factor: 3.993

10.  Flow-induced segregation and dynamics of red blood cells in sickle cell disease.

Authors:  Xiao Zhang; Christina Caruso; Wilbur A Lam; Michael D Graham
Journal:  Phys Rev Fluids       Date:  2020-05-04       Impact factor: 2.537

  10 in total

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