Literature DB >> 17501066

Internal mechanical response of a polymer in solution.

Adam E Cohen1, W E Moerner.   

Abstract

We observed single molecules of fluorescently labeled double-stranded (ds) lambda DNA held in an anti-Brownian electrokinetic trap. From the measured density fluctuations we extract the density-density response function of the molecule over times >4.5 ms and distances >250 nm, i.e., how a perturbation in density in one part of the molecule propagates through the rest of the molecule. We find a nonmonotonic radial dependence of the relaxation time. In contrast with earlier measurements on freely diffusing dsDNA, we observe clear signs of internal hydrodynamic interactions.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17501066      PMCID: PMC2441641          DOI: 10.1103/PhysRevLett.98.116001

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  6 in total

1.  Dynamics of large semiflexible chains probed by fluorescence correlation spectroscopy.

Authors:  D Lumma; S Keller; T Vilgis; J O Rädler
Journal:  Phys Rev Lett       Date:  2003-05-30       Impact factor: 9.161

2.  Monomer dynamics in double- and single-stranded DNA polymers.

Authors:  Roman Shusterman; Sergey Alon; Tatyana Gavrinyov; Oleg Krichevsky
Journal:  Phys Rev Lett       Date:  2004-01-29       Impact factor: 9.161

3.  Conformation and dynamics of single DNA molecules in parallel-plate slit microchannels.

Authors:  Y-L Chen; M D Graham; J J de Pablo; G C Randall; M Gupta; P S Doyle
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-12-13

4.  Probing single DNA mobility with fluorescence correlation microscopy.

Authors:  Svetlana A Tatarkova; David A Berk
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-04-27

5.  Diffusion of isolated DNA molecules: dependence on length and topology.

Authors:  Rae M Robertson; Stephan Laib; Douglas E Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-28       Impact factor: 11.205

6.  Suppressing Brownian motion of individual biomolecules in solution.

Authors:  Adam E Cohen; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

  6 in total
  12 in total

1.  Fluctuation modes of nanoconfined DNA.

Authors:  Alena Karpusenko; Joshua H Carpenter; Chunda Zhou; Shuang Fang Lim; Junhan Pan; Robert Riehn
Journal:  J Appl Phys       Date:  2012-01-17       Impact factor: 2.546

2.  Intramolecular fluorescence correlation spectroscopy in a feedback tracking microscope.

Authors:  Kevin McHale; Hideo Mabuchi
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

3.  New directions in single-molecule imaging and analysis.

Authors:  W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

4.  Principal-components analysis of shape fluctuations of single DNA molecules.

Authors:  Adam E Cohen; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-11       Impact factor: 11.205

5.  Controlling Brownian motion of single protein molecules and single fluorophores in aqueous buffer.

Authors:  Adam E Cohen; W E Moerner
Journal:  Opt Express       Date:  2008-05-12       Impact factor: 3.894

6.  Density fluctuations dispersion relationship for a polymer confined to a nanotube.

Authors:  Joshua H Carpenter; Alena Karpusenko; Junhan Pan; Shuang Fang Lim; Robert Riehn
Journal:  Appl Phys Lett       Date:  2011-06-21       Impact factor: 3.791

7.  Microfluidic systems for single DNA dynamics.

Authors:  Danielle J Mai; Christopher Brockman; Charles M Schroeder
Journal:  Soft Matter       Date:  2012-07-03       Impact factor: 3.679

8.  Role of microscopic flexibility in tightly curved DNA.

Authors:  Maryna Taranova; Andrew D Hirsh; Noel C Perkins; Ioan Andricioaei
Journal:  J Phys Chem B       Date:  2014-09-16       Impact factor: 2.991

9.  Conserved linear dynamics of single-molecule Brownian motion.

Authors:  Maged F Serag; Satoshi Habuchi
Journal:  Nat Commun       Date:  2017-06-06       Impact factor: 14.919

10.  Single-molecule diffusion and conformational dynamics by spatial integration of temporal fluctuations.

Authors:  Maged F Serag; Maram Abadi; Satoshi Habuchi
Journal:  Nat Commun       Date:  2014-10-06       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.