Literature DB >> 17497893

FTIR study on the hydrogen bond structure of a key tyrosine residue in the flavin-binding blue light sensor TePixD from Thermosynechococcus elongatus.

Ryouta Takahashi1, Koji Okajima, Hiroyuki Suzuki, Hiro Nakamura, Masahiko Ikeuchi, Takumi Noguchi.   

Abstract

The BLUF (sensor of blue light using FAD) domain is a blue light receptor possessing a flavin molecule as an active cofactor. A conserved Tyr residue located adjacent to flavin has been proposed to be a key amino acid in the mechanism of the photoreaction of the BLUF domain. We have studied the structure of this key Tyr residue and the relevance to the photoreaction in the BLUF protein of the cyanobacterium Thermosynechococcus elongatus, TePixD, by means of Fourier transform infrared (FTIR) difference spectroscopy and density functional theory (DFT) calculations. Light-induced FTIR difference spectra of unlabeled and [4-13C]Tyr-labeled TePixD in H2O and D2O revealed that the nuCO/deltaCOH vibrations of a photosensitive Tyr side chain are located at 1265/1242 cm-1 in the dark-adapted state and at 1273/1235 cm-1 in the light-induced signaling state. These signals were assigned to the vibrations of Tyr8 near flavin from the absence of the effect of [4-13C]Tyr labeling in the Tyr8Phe mutant. DFT calculations of H-bonded complexes of p-cresol with amides as models of the Tyr8-Gln50 interactions showed that Tyr8 acts as a H-bond donor to the Gln50 in both of the dark and light states. Further DFT analysis suggested that this H-bond is strengthened upon photoconversion to the light state accompanied with a change in the H-bond angle. The change in the H-bond structure of Tyr8 is coupled to the flavin photoreaction probably through the Tyr8-Gln50-flavin H-bond network, suggesting a significant role of Tyr8 in the photoreaction mechanism of TePixD.

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Year:  2007        PMID: 17497893     DOI: 10.1021/bi7004653

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  16 in total

1.  Light-induced hydrogen bonding pattern and driving force of electron transfer in AppA BLUF domain photoreceptor.

Authors:  Hiroshi Ishikita
Journal:  J Biol Chem       Date:  2008-07-21       Impact factor: 5.157

2.  On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome.

Authors:  Heikki Takala; Heli K Lehtivuori; Oskar Berntsson; Ashley Hughes; Rahul Nanekar; Stephan Niebling; Matthijs Panman; Léocadie Henry; Andreas Menzel; Sebastian Westenhoff; Janne A Ihalainen
Journal:  J Biol Chem       Date:  2018-04-05       Impact factor: 5.157

3.  Molecular mechanism of photoactivation of a light-regulated adenylate cyclase.

Authors:  Mio Ohki; Ayana Sato-Tomita; Shigeru Matsunaga; Mineo Iseki; Jeremy R H Tame; Naoya Shibayama; Sam-Yong Park
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

4.  Structural refinement of a key tryptophan residue in the BLUF photoreceptor AppA by ultraviolet resonance Raman spectroscopy.

Authors:  Masashi Unno; Sadato Kikuchi; Shinji Masuda
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

5.  Fourier-transform infrared study of the photoactivation process of Xenopus (6-4) photolyase.

Authors:  Daichi Yamada; Yu Zhang; Tatsuya Iwata; Kenichi Hitomi; Elizabeth D Getzoff; Hideki Kandori
Journal:  Biochemistry       Date:  2012-07-13       Impact factor: 3.162

6.  Time-Resolved Infrared and Visible Spectroscopy on Cryptochrome aCRY: Basis for Red Light Reception.

Authors:  Sabine Oldemeyer; Maria Mittag; Tilman Kottke
Journal:  Biophys J       Date:  2019-07-03       Impact factor: 4.033

Review 7.  Seeing the light with BLUF proteins.

Authors:  Sam-Yong Park; Jeremy R H Tame
Journal:  Biophys Rev       Date:  2017-03-24

8.  Hydrogen bond switching among flavin and amino acid side chains in the BLUF photoreceptor observed by ultrafast infrared spectroscopy.

Authors:  Cosimo Bonetti; Tilo Mathes; Ivo H M van Stokkum; Katharine M Mullen; Marie-Louise Groot; Rienk van Grondelle; Peter Hegemann; John T M Kennis
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

9.  Mechanism of the AppABLUF Photocycle Probed by Site-Specific Incorporation of Fluorotyrosine Residues: Effect of the Y21 pKa on the Forward and Reverse Ground-State Reactions.

Authors:  Agnieszka Gil; Allison Haigney; Sergey P Laptenok; Richard Brust; Andras Lukacs; James Iuliano; Jessica Jeng; Eduard Melief; Rui-Kun Zhao; EunBin Yoon; Ian Clark; Michael Towrie; Gregory M Greetham; Annabelle Ng; James Truglio; Jarrod French; Stephen R Meech; Peter J Tonge
Journal:  J Am Chem Soc       Date:  2016-01-15       Impact factor: 15.419

10.  Molecular models predict light-induced glutamine tautomerization in BLUF photoreceptors.

Authors:  Tatiana Domratcheva; Bella L Grigorenko; Ilme Schlichting; Alexander V Nemukhin
Journal:  Biophys J       Date:  2008-02-08       Impact factor: 4.033

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