Literature DB >> 17496052

Secondary and tertiary structure elasticity of titin Z1Z2 and a titin chain model.

Eric H Lee1, Jen Hsin, Olga Mayans, Klaus Schulten.   

Abstract

The giant protein titin, which is responsible for passive elasticity in muscle fibers, is built from approximately 300 regular immunoglobulin-like (Ig) domains and FN-III repeats. While the soft elasticity derived from its entropic regions, as well as the stiff mechanical resistance derived from the unfolding of the secondary structure elements of Ig- and FN-III domains have been studied extensively, less is known about the mechanical elasticity stemming from the orientation of neighboring domains relative to each other. Here we address the dynamics and energetics of interdomain arrangement of two adjacent Ig-domains of titin, Z1, and Z2, using molecular dynamics (MD) simulations. The simulations reveal conformational flexibility, due to the domain-domain geometry, that lends an intermediate force elasticity to titin. We employ adaptive biasing force MD simulations to calculate the energy required to bend the Z1Z2 tandem open to identify energetically feasible interdomain arrangements of the Z1 and Z2 domains. The finding is cast into a stochastic model for Z1Z2 interdomain elasticity that is generalized to a multiple domain chain replicating many Z1Z2-like units and representing a long titin segment. The elastic properties of this chain suggest that titin derives so-called tertiary structure elasticity from bending and twisting of its domains. Finally, we employ steered molecular dynamics simulations to stretch individual Z1 and Z2 domains and characterize the so-called secondary structure elasticity of the two domains. Our study suggests that titin's overall elastic response at weak force stems from a soft entropic spring behavior (not described here), from tertiary structure elasticity with an elastic spring constant of approximately 0.001-1 pN/A and, at strong forces, from secondary structure elasticity.

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Year:  2007        PMID: 17496052      PMCID: PMC1948054          DOI: 10.1529/biophysj.107.105528

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  88 in total

1.  Mechanical unfolding intermediates in titin modules.

Authors:  P E Marszalek; H Lu; H Li; M Carrion-Vazquez; A F Oberhauser; K Schulten; J M Fernandez
Journal:  Nature       Date:  1999-11-04       Impact factor: 49.962

2.  Steered molecular dynamics simulations of force-induced protein domain unfolding.

Authors:  H Lu; K Schulten
Journal:  Proteins       Date:  1999-06-01

3.  Modeling AFM-induced PEVK extension and the reversible unfolding of Ig/FNIII domains in single and multiple titin molecules.

Authors:  B Zhang; J S Evans
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

4.  Unfolding proteins by external forces and temperature: the importance of topology and energetics.

Authors:  E Paci; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

5.  Unfolding of titin domains explains the viscoelastic behavior of skeletal myofibrils.

Authors:  A Minajeva; M Kulke; J M Fernandez; W A Linke
Journal:  Biophys J       Date:  2001-03       Impact factor: 4.033

6.  Mechanical and chemical unfolding of a single protein: a comparison.

Authors:  M Carrion-Vazquez; A F Oberhauser; S B Fowler; P E Marszalek; S E Broedel; J Clarke; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

7.  Thick filament assembly occurs after the formation of a cytoskeletal scaffold.

Authors:  P F Van der Ven; E Ehler; J C Perriard; D O Fürst
Journal:  J Muscle Res Cell Motil       Date:  1999-08       Impact factor: 2.698

8.  Mechanical fatigue in repetitively stretched single molecules of titin.

Authors:  M S Kellermayer; S B Smith; C Bustamante; H L Granzier
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

Review 9.  Stretching molecular springs: elasticity of titin filaments in vertebrate striated muscle.

Authors:  W A Linke
Journal:  Histol Histopathol       Date:  2000-07       Impact factor: 2.303

10.  The key event in force-induced unfolding of Titin's immunoglobulin domains.

Authors:  H Lu; K Schulten
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

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  17 in total

1.  Tertiary and secondary structure elasticity of a six-Ig titin chain.

Authors:  Eric H Lee; Jen Hsin; Eleonore von Castelmur; Olga Mayans; Klaus Schulten
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

2.  Molecular investigations into the mechanics of a muscle anchoring complex.

Authors:  Nicholas K Bodmer; Kelly E Theisen; Ruxandra I Dima
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

3.  The allosteric role of the Ca2+ switch in adhesion and elasticity of C-cadherin.

Authors:  Marcos Sotomayor; Klaus Schulten
Journal:  Biophys J       Date:  2008-03-07       Impact factor: 4.033

4.  A regular pattern of Ig super-motifs defines segmental flexibility as the elastic mechanism of the titin chain.

Authors:  Eleonore von Castelmur; Marco Marino; Dmitri I Svergun; Laurent Kreplak; Zöhre Ucurum-Fotiadis; Petr V Konarev; Alexandre Urzhumtsev; Dietmar Labeit; Siegfried Labeit; Olga Mayans
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-22       Impact factor: 11.205

5.  An energetic model for macromolecules unfolding in stretching experiments.

Authors:  D De Tommasi; N Millardi; G Puglisi; G Saccomandi
Journal:  J R Soc Interface       Date:  2013-09-18       Impact factor: 4.118

6.  Improved resolution of tertiary structure elasticity in muscle protein.

Authors:  Jen Hsin; Klaus Schulten
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

7.  Physical characterization of nanoparticle size and surface modification using particle scattering diffusometry.

Authors:  Katherine N Clayton; Janelle W Salameh; Steven T Wereley; Tamara L Kinzer-Ursem
Journal:  Biomicrofluidics       Date:  2016-09-21       Impact factor: 2.800

8.  The myofibrillar protein, projectin, is highly conserved across insect evolution except for its PEVK domain.

Authors:  Agnes J Ayme-Southgate; Richard J Southgate; Richard A Philipp; Erik E Sotka; Catherine Kramp
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395

Review 9.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

10.  Dynamic strength of titin's Z-disk end.

Authors:  Veronika Kollár; Dávid Szatmári; László Grama; Miklós S Z Kellermayer
Journal:  J Biomed Biotechnol       Date:  2010-04-19
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