Literature DB >> 10866937

The key event in force-induced unfolding of Titin's immunoglobulin domains.

H Lu1, K Schulten.   

Abstract

Steered molecular dynamics simulation of force-induced titin immunoglobulin domain I27 unfolding led to the discovery of a significant potential energy barrier at an extension of approximately 14 A on the unfolding pathway that protects the domain against stretching. Previous simulations showed that this barrier is due to the concurrent breaking of six interstrand hydrogen bonds (H-bonds) between beta-strands A' and G that is preceded by the breaking of two to three hydrogen bonds between strands A and B, the latter leading to an unfolding intermediate. The simulation results are supported by Angstrom-resolution atomic force microscopy data. Here we perform a structural and energetic analysis of the H-bonds breaking. It is confirmed that H-bonds between strands A and B break rapidly. However, the breaking of the H-bond between strands A' and G needs to be assisted by fluctuations of water molecules. In nanosecond simulations, water molecules are found to repeatedly interact with the protein backbone atoms, weakening individual interstrand H-bonds until all six A'-G H-bonds break simultaneously under the influence of external stretching forces. Only when those bonds are broken can the generic unfolding take place, which involves hydrophobic interactions of the protein core and exerts weaker resistance against stretching than the key event.

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Year:  2000        PMID: 10866937      PMCID: PMC1300915          DOI: 10.1016/S0006-3495(00)76273-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  36 in total

1.  Mechanical unfolding intermediates in titin modules.

Authors:  P E Marszalek; H Lu; H Li; M Carrion-Vazquez; A F Oberhauser; K Schulten; J M Fernandez
Journal:  Nature       Date:  1999-11-04       Impact factor: 49.962

2.  Folding studies of immunoglobulin-like beta-sandwich proteins suggest that they share a common folding pathway.

Authors:  J Clarke; E Cota; S B Fowler; S J Hamill
Journal:  Structure       Date:  1999-09-15       Impact factor: 5.006

3.  Mechanical unfolding of a beta-hairpin using molecular dynamics.

Authors:  Z Bryant; V S Pande; D S Rokhsar
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

4.  Solid-state synthesis and mechanical unfolding of polymers of T4 lysozyme.

Authors:  G Yang; C Cecconi; W A Baase; I R Vetter; W A Breyer; J A Haack; B W Matthews; F W Dahlquist; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

5.  Mechanical and chemical unfolding of a single protein: a comparison.

Authors:  M Carrion-Vazquez; A F Oberhauser; S B Fowler; P E Marszalek; S E Broedel; J Clarke; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

6.  Unraveling proteins: a molecular mechanics study.

Authors:  R Rohs; C Etchebest; R Lavery
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

7.  Investigating a back door mechanism of actin phosphate release by steered molecular dynamics.

Authors:  W Wriggers; K Schulten
Journal:  Proteins       Date:  1999-05-01

8.  Strength of a weak bond connecting flexible polymer chains.

Authors:  E Evans; K Ritchie
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

9.  Forced unfolding of fibronectin type 3 modules: an analysis by biased molecular dynamics simulations.

Authors:  E Paci; M Karplus
Journal:  J Mol Biol       Date:  1999-05-07       Impact factor: 5.469

10.  Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch.

Authors:  A Krammer; H Lu; B Isralewitz; K Schulten; V Vogel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-16       Impact factor: 11.205

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  85 in total

1.  Simulated refolding of stretched titin immunoglobulin domains.

Authors:  M Gao; H Lu; K Schulten
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

2.  Can non-mechanical proteins withstand force? Stretching barnase by atomic force microscopy and molecular dynamics simulation.

Authors:  R B Best; B Li; A Steward; V Daggett; J Clarke
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

3.  Comparison of the early stages of forced unfolding for fibronectin type III modules.

Authors:  D Craig; A Krammer; K Schulten; V Vogel
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

4.  The effect of core destabilization on the mechanical resistance of I27.

Authors:  David J Brockwell; Godfrey S Beddard; John Clarkson; Rebecca C Zinober; Anthony W Blake; John Trinick; Peter D Olmsted; D Alastair Smith; Sheena E Radford
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

5.  Molecular dynamics investigation of primary photoinduced events in the activation of rhodopsin.

Authors:  Jan Saam; Emad Tajkhorshid; Shigehiko Hayashi; Klaus Schulten
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

6.  Steered molecular dynamics studies of titin I1 domain unfolding.

Authors:  Mu Gao; Matthias Wilmanns; Klaus Schulten
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

7.  The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.

Authors:  Michael Schlierf; Hongbin Li; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

8.  Reversible mechanical unfolding of single ubiquitin molecules.

Authors:  Chia-Lin Chyan; Fan-Chi Lin; Haibo Peng; Jian-Min Yuan; Chung-Hung Chang; Sheng-Hsien Lin; Guoliang Yang
Journal:  Biophys J       Date:  2004-09-10       Impact factor: 4.033

9.  Origin of mechanical strength of bovine carbonic anhydrase studied by molecular dynamics simulation.

Authors:  Satoko Ohta; Mohammad Taufiq Alam; Hideo Arakawa; Atsushi Ikai
Journal:  Biophys J       Date:  2004-09-17       Impact factor: 4.033

10.  Computational investigation of the effect of thermal perturbation on the mechanical unfolding of titin I27.

Authors:  Navneet Bung; U Deva Priyakumar
Journal:  J Mol Model       Date:  2011-11-27       Impact factor: 1.810

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