Literature DB >> 17492887

Ultrafast repair of irradiated DNA: nonadiabatic ab initio simulations of the guanine-cytosine photocycle.

Phineus R L Markwick1, Nikos L Doltsinis.   

Abstract

Nonadiabatic first-principles molecular dynamics simulations have been performed of the photoexcited Watson-Crick guanine-cytosine (GC) DNA base pair in the gas phase and in aqueous solution. An excited state coupled proton-electron transfer (CPET) from G to C along the central hydrogen bond is observed upon excitation of the pipi* state initially localized on G. In the resulting charge transfer state a conical intersection between the excited state and the ground state is easily accessible. Therefore radiationless decay is fast, of the order of 100 fs, followed by a rapid CPET back reaction retrieving the initial Watson-Crick structure. A detailed analysis of the mechanism of nonradiative decay suggests a biexponential behavior in which out-of-plane motion plays a special role for the longer decay component.

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Year:  2007        PMID: 17492887     DOI: 10.1063/1.2728897

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

Review 1.  Proton-coupled electron transfer.

Authors:  My Hang V Huynh; Thomas J Meyer
Journal:  Chem Rev       Date:  2007-11       Impact factor: 60.622

2.  Photochemistry of hydrogen-bonded aromatic pairs: Quantum dynamical calculations for the pyrrole-pyridine complex.

Authors:  Zhenggang Lan; Luis Manuel Frutos; Andrzej L Sobolewski; Wolfgang Domcke
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-28       Impact factor: 11.205

3.  Deuterium isotope effect on excited-state dynamics in an alternating GC oligonucleotide.

Authors:  Kimberly de La Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

4.  Excited state proton-coupled electron transfer in 8-oxoG-C and 8-oxoG-A base pairs: a time dependent density functional theory (TD-DFT) study.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  Photochem Photobiol Sci       Date:  2013-08       Impact factor: 3.982

5.  Role of Electron-Driven Proton-Transfer Processes in the Ultrafast Deactivation of Photoexcited Anionic 8-oxoGuanine-Adenine and 8-oxoGuanine-Cytosine Base Pairs.

Authors:  Xiuxiu Wu; Tolga N V Karsili; Wolfgang Domcke
Journal:  Molecules       Date:  2017-01-14       Impact factor: 4.411

6.  The Ultrafast Quantum Dynamics of Photoexcited Adenine-Thymine Basepair Investigated with a Fragment-based Diabatization and a Linear Vibronic Coupling Model.

Authors:  Martha Yaghoubi Jouybari; James A Green; Roberto Improta; Fabrizio Santoro
Journal:  J Phys Chem A       Date:  2021-10-05       Impact factor: 2.944

7.  Exploring the Photophysical Properties of Molecular Systems Using Excited State Accelerated ab Initio Molecular Dynamics.

Authors:  Juan Manuel Ortiz-Sánchez; Denis Bucher; Levi C T Pierce; Phineus R L Markwick; J Andrew McCammon
Journal:  J Chem Theory Comput       Date:  2012-06-28       Impact factor: 6.006

8.  Dynamics of the excited-state hydrogen transfer in a (dG)·(dC) homopolymer: intrinsic photostability of DNA.

Authors:  Antonio Francés-Monerris; Hugo Gattuso; Daniel Roca-Sanjuán; Iñaki Tuñón; Marco Marazzi; Elise Dumont; Antonio Monari
Journal:  Chem Sci       Date:  2018-09-18       Impact factor: 9.825

  8 in total

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