Literature DB >> 18663223

Photochemistry of hydrogen-bonded aromatic pairs: Quantum dynamical calculations for the pyrrole-pyridine complex.

Zhenggang Lan1, Luis Manuel Frutos, Andrzej L Sobolewski, Wolfgang Domcke.   

Abstract

The photochemical dynamics of the pyrrole-pyridine hydrogen-bonded complex has been investigated with computational methods. In this system, a highly polar charge-transfer state of (1)pipi* character drives the proton transfer from pyrrole to pyridine, leading to a conical intersection of S(1) and S(0) energy surfaces. A two-sheeted potential-energy surface including 39 in-plane nuclear degrees of freedom has been constructed on the basis of ab initio multiconfiguration electronic-structure data. The non-Born-Oppenheimer nuclear dynamics has been treated with time-dependent quantum wave-packet methods, including the two or three most relevant nuclear degrees of freedom. The effect of the numerous weakly coupled vibrational modes has been taken into account with reduced-density-matrix methods (multilevel Redfield theory). The results provide insight into the mechanisms of excited-state deactivation of hydrogen-bonded aromatic systems via the electron-driven proton-transfer process. This process is believed to be of relevance for the ultrafast excited-state deactivation of DNA base pairs and may contribute to the photostability of the molecular encoding of the genetic information.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18663223      PMCID: PMC2529040          DOI: 10.1073/pnas.0801062105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

1.  Efficient deactivation of a model base pair via excited-state hydrogen transfer.

Authors:  Thomas Schultz; Elena Samoylova; Wolfgang Radloff; Ingolf V Hertel; Andrzej L Sobolewski; Wolfgang Domcke
Journal:  Science       Date:  2004-12-03       Impact factor: 47.728

2.  The curvature of the conical intersection seam: an approximate second-order analysis.

Authors:  Martin J Paterson; Michael J Bearpark; Michael A Robb; Lluís Blancafort
Journal:  J Chem Phys       Date:  2004-12-15       Impact factor: 3.488

3.  Short-time dynamics through conical intersections in macrosystems.

Authors:  Lorenz S Cederbaum; Etienne Gindensperger; Irene Burghardt
Journal:  Phys Rev Lett       Date:  2005-03-23       Impact factor: 9.161

4.  Photochemical selectivity in guanine-cytosine base-pair structures.

Authors:  Ali Abo-Riziq; Louis Grace; Eyal Nir; Martin Kabelac; Pavel Hobza; Mattanjah S de Vries
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-23       Impact factor: 11.205

5.  Ultrafast electronic relaxation in guanosine is promoted by hydrogen bonding with cytidine.

Authors:  Nina K Schwalb; Friedrich Temps
Journal:  J Am Chem Soc       Date:  2007-07-10       Impact factor: 15.419

6.  Photoinduced electron and proton transfer in the hydrogen-bonded pyridine-pyrrole system.

Authors:  Luis Manuel Frutos; Andreas Markmann; Andrzej L Sobolewski; Wolfgang Domcke
Journal:  J Phys Chem B       Date:  2007-05-16       Impact factor: 2.991

7.  Ultrafast deactivation of an excited cytosine-guanine base pair in DNA.

Authors:  Gerrit Groenhof; Lars V Schäfer; Martial Boggio-Pasqua; Maik Goette; Helmut Grubmüller; Michael A Robb
Journal:  J Am Chem Soc       Date:  2007-05-08       Impact factor: 15.419

8.  Photophysics of eumelanin: ab initio studies on the electronic spectroscopy and photochemistry of 5,6-dihydroxyindole.

Authors:  Andrzej L Sobolewski; Wolfgang Domcke
Journal:  Chemphyschem       Date:  2007-04-02       Impact factor: 3.102

9.  Role of electron-driven proton-transfer processes in the excited-state deactivation of the adenine-thymine base pair.

Authors:  Serhiy Perun; Andrzej L Sobolewski; Wolfgang Domcke
Journal:  J Phys Chem A       Date:  2006-07-27       Impact factor: 2.781

10.  Ultrafast repair of irradiated DNA: nonadiabatic ab initio simulations of the guanine-cytosine photocycle.

Authors:  Phineus R L Markwick; Nikos L Doltsinis
Journal:  J Chem Phys       Date:  2007-05-07       Impact factor: 3.488

View more
  7 in total

1.  Proton-transfer and hydrogen-bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome.

Authors:  K C Toh; Emina A Stojkovic; Ivo H M van Stokkum; Keith Moffat; John T M Kennis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-30       Impact factor: 11.205

Review 2.  Proton-coupled electron transfer.

Authors:  My Hang V Huynh; Thomas J Meyer
Journal:  Chem Rev       Date:  2007-11       Impact factor: 60.622

3.  Chemical reaction dynamics.

Authors:  F Fleming Crim
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-27       Impact factor: 11.205

4.  Conical intersections in solution: formulation, algorithm, and implementation with combined quantum mechanics/molecular mechanics method.

Authors:  Ganglong Cui; Weitao Yang
Journal:  J Chem Phys       Date:  2011-05-28       Impact factor: 3.488

5.  Partitioning of 2,6-Bis(1H-Benzimidazol-2-yl)pyridine fluorophore into a phospholipid bilayer: complementary use of fluorescence quenching studies and molecular dynamics simulations.

Authors:  Alexander Kyrychenko; Igor Yu Sevriukov; Zoya A Syzova; Alexey S Ladokhin; Andrey O Doroshenko
Journal:  Biophys Chem       Date:  2010-12-13       Impact factor: 2.352

6.  New insights on the 7-azaindole photophysics: the overlooked role of its non phototautomerizable hydrogen bonded complexes.

Authors:  Carmen Carmona; Emilio García-Fernández; José Hidalgo; Antonio Sánchez-Coronilla; Manuel Balón
Journal:  J Fluoresc       Date:  2013-07-20       Impact factor: 2.217

7.  Rotational spectrum and internal dynamics of the hydrogen-bonded pyrrole-pyridine aromatic pair.

Authors:  Carlos Cabezas; Isabel Peña; Walther Caminati
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2020-12-15       Impact factor: 4.098

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.