Literature DB >> 17483260

Self-formed adaptor PCR: a simple and efficient method for chromosome walking.

Shiming Wang1, Jian He, Zhongli Cui, Shunpeng Li.   

Abstract

We developed a self-formed adaptor PCR (termed SEFA PCR) which can be used for chromosome walking. Most of the amplified flanking sequences were longer than 2.0 kb, and some were as long as 6.0 kb. SEFA PCR is simple and efficient and should have broad applications in the isolation of unknown sequences in complex genomes.

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Year:  2007        PMID: 17483260      PMCID: PMC1951051          DOI: 10.1128/AEM.02973-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  19 in total

1.  Sequence specific generation of a DNA panhandle permits PCR amplification of unknown flanking DNA.

Authors:  D H Jones; S C Winistorfer
Journal:  Nucleic Acids Res       Date:  1992-02-11       Impact factor: 16.971

2.  Chased PCR: A modified inverse PCR technique to characterize flanking regions of AT-rich DNA fragments.

Authors:  Hosam Shams-Eldin; Françoise Debierre-Grockiego; Ralph T Schwarz
Journal:  J Mol Microbiol Biotechnol       Date:  2003

3.  Molecular analysis of high-copy insertion sites in maize.

Authors:  A Mark Settles; Susan Latshaw; Donald R McCarty
Journal:  Nucleic Acids Res       Date:  2004-04-01       Impact factor: 16.971

4.  Cloning regions of the Drosophila genome by microdissection of polytene chromosome DNA and PCR with nonspecific primer.

Authors:  C S Wesley; M Ben; M Kreitman; N Hagag; W F Eanes
Journal:  Nucleic Acids Res       Date:  1990-02-11       Impact factor: 16.971

5.  In vivo footprinting of a muscle specific enhancer by ligation mediated PCR.

Authors:  P R Mueller; B Wold
Journal:  Science       Date:  1989-11-10       Impact factor: 47.728

6.  A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones.

Authors:  J Riley; R Butler; D Ogilvie; R Finniear; D Jenner; S Powell; R Anand; J C Smith; A F Markham
Journal:  Nucleic Acids Res       Date:  1990-05-25       Impact factor: 16.971

7.  DOP-vector PCR: a method for rapid isolation and sequencing of insert termini from PAC clones.

Authors:  C Wu; S Zhu; S Simpson; P J de Jong
Journal:  Nucleic Acids Res       Date:  1996-07-01       Impact factor: 16.971

8.  One-sided polymerase chain reaction: the amplification of cDNA.

Authors:  O Ohara; R L Dorit; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1989-08       Impact factor: 11.205

9.  Alu polymerase chain reaction: a method for rapid isolation of human-specific sequences from complex DNA sources.

Authors:  D L Nelson; S A Ledbetter; L Corbo; M F Victoria; R Ramírez-Solis; T D Webster; D H Ledbetter; C T Caskey
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

10.  Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking.

Authors:  Y G Liu; R F Whittier
Journal:  Genomics       Date:  1995-02-10       Impact factor: 5.736

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  52 in total

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Journal:  Antimicrob Agents Chemother       Date:  2010-06-01       Impact factor: 5.191

2.  A simple one-step PCR walking method and its application of bacterial rRNA for sequencing identification.

Authors:  Hongfa Zhang; Chunping You; Jing Ren; Dan Xu; Mei Han; Wenyan Liao
Journal:  Curr Microbiol       Date:  2013-11-21       Impact factor: 2.188

3.  A simple one-step PCR walking method and its application of bacterial rRNA for sequencing identification.

Authors:  Hongfa Zhang; Chunping You; Jing Ren; Dan Xu; Mei Han; Wenyan Liao
Journal:  Curr Microbiol       Date:  2013-10-15       Impact factor: 2.188

4.  The novel bacterial N-demethylase PdmAB is responsible for the initial step of N,N-dimethyl-substituted phenylurea herbicide degradation.

Authors:  Tao Gu; Chaoyang Zhou; Sebastian R Sørensen; Ji Zhang; Jian He; Peiwen Yu; Xin Yan; Shunpeng Li
Journal:  Appl Environ Microbiol       Date:  2013-10-11       Impact factor: 4.792

5.  Facilitation of bacterial adaptation to chlorothalonil-contaminated sites by horizontal transfer of the chlorothalonil hydrolytic dehalogenase gene.

Authors:  Bin Liang; Guangli Wang; Yanfu Zhao; Kai Chen; Shunpeng Li; Jiandong Jiang
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

6.  Functional identification of two novel genes from Pseudomonas sp. strain HZN6 involved in the catabolism of nicotine.

Authors:  Jiguo Qiu; Yun Ma; Yuezhong Wen; Liansheng Chen; Lifei Wu; Weiping Liu
Journal:  Appl Environ Microbiol       Date:  2012-01-20       Impact factor: 4.792

7.  Isolation of monocrotophos-degrading strain Sphingobiumsp. YW16 and cloning of its TnopdA.

Authors:  Lina Sun; Hongming Liu; Xinhua Gao; Wei Chen; Kaihua Huang; Sui Zhang
Journal:  Environ Sci Pollut Res Int       Date:  2017-12-04       Impact factor: 4.223

8.  Metabolic pathway involved in 2-methyl-6-ethylaniline degradation by Sphingobium sp. strain MEA3-1 and cloning of the novel flavin-dependent monooxygenase system meaBA.

Authors:  Weiliang Dong; Qiongzhen Chen; Ying Hou; Shuhuan Li; Kai Zhuang; Fei Huang; Jie Zhou; Zhoukun Li; Jue Wang; Lei Fu; Zhengguang Zhang; Yan Huang; Fei Wang; Zhongli Cui
Journal:  Appl Environ Microbiol       Date:  2015-09-18       Impact factor: 4.792

9.  A new acidophilic endo-β-1,4-xylanase from Penicillium oxalicum: cloning, purification, and insights into the influence of metal ions on xylanase activity.

Authors:  Hanpeng Liao; Shaowei Sun; Pan Wang; Wenli Bi; Shiyong Tan; Zhong Wei; Xinlan Mei; Dongyang Liu; Waseem Raza; Qirong Shen; Yangchun Xu
Journal:  J Ind Microbiol Biotechnol       Date:  2014-05-13       Impact factor: 3.346

10.  Detection, distribution, and organohalogen compound discovery implications of the reduced flavin adenine dinucleotide-dependent halogenase gene in major filamentous actinomycete taxonomic groups.

Authors:  Peng Gao; Ying Huang
Journal:  Appl Environ Microbiol       Date:  2009-05-15       Impact factor: 4.792

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