Literature DB >> 17472929

Emergence of protocellular growth laws.

Tristan Rocheleau1, Steen Rasmussen, Peter E Nielsen, Martin N Jacobi, Hans Ziock.   

Abstract

Template-directed replication is known to obey a parabolic growth law due to product inhibition (Sievers & Von Kiedrowski 1994 Nature 369, 221; Lee et al. 1996 Nature 382, 525; Varga & Szathmáry 1997 Bull. Math. Biol. 59, 1145). We investigate a template-directed replication with a coupled template catalysed lipid aggregate production as a model of a minimal protocell and show analytically that the autocatalytic template-container feedback ensures balanced exponential replication kinetics; both the genes and the container grow exponentially with the same exponent. The parabolic gene replication does not limit the protocellular growth, and a detailed stoichiometric control of the individual protocell components is not necessary to ensure a balanced gene-container growth as conjectured by various authors (Gánti 2004 Chemoton theory). Our analysis also suggests that the exponential growth of most modern biological systems emerges from the inherent spatial quality of the container replication process as we show analytically how the internal gene and metabolic kinetics determine the cell population's generation time and not the growth law (Burdett & Kirkwood 1983 J. Theor. Biol. 103, 11-20; Novak et al. 1998 Biophys. Chem. 72, 185-200; Tyson et al. 2003 Curr. Opin. Cell Biol. 15, 221-231). Previous extensive replication reaction kinetic studies have mainly focused on template replication and have not included a coupling to metabolic container dynamics (Stadler et al. 2000 Bull. Math. Biol. 62, 1061-1086; Stadler & Stadler 2003 Adv. Comp. Syst. 6, 47). The reported results extend these investigations. Finally, the coordinated exponential gene-container growth law stemming from catalysis is an encouraging circumstance for the many experimental groups currently engaged in assembling self-replicating minimal artificial cells (Szostak 2001 et al. Nature 409, 387-390; Pohorille & Deamer 2002 Trends Biotech. 20 123-128; Rasmussen et al. 2004 Science 303, 963-965; Szathma ry 2005 Nature 433, 469-470; Luisi et al. 2006 Naturwissenschaften 93, 1-13).

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Year:  2007        PMID: 17472929      PMCID: PMC2442398          DOI: 10.1098/rstb.2007.2076

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  15 in total

1.  Dynamics of autocatalytic replicator networks based on higher-order ligation reactions.

Authors:  B M Stadler; P F Stadler; P Schuster
Journal:  Bull Math Biol       Date:  2000-11       Impact factor: 1.758

Review 2.  Artificial cells: prospects for biotechnology.

Authors:  Andrew Pohorille; David Deamer
Journal:  Trends Biotechnol       Date:  2002-03       Impact factor: 19.536

Review 3.  Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.

Authors:  John J Tyson; Katherine C Chen; Bela Novak
Journal:  Curr Opin Cell Biol       Date:  2003-04       Impact factor: 8.382

4.  Bridging nonliving and living matter.

Authors:  Steen Rasmussen; Liaohai Chen; Martin Nilsson; Shigeaki Abe
Journal:  Artif Life       Date:  2003       Impact factor: 0.667

5.  Evolution. Transitions from nonliving to living matter.

Authors:  Steen Rasmussen; Liaohai Chen; David Deamer; David C Krakauer; Norman H Packard; Peter F Stadler; Mark A Bedau
Journal:  Science       Date:  2004-02-13       Impact factor: 47.728

6.  Sequence fidelity of a template-directed PNA-ligation reaction.

Authors:  A Mattes; O Seitz
Journal:  Chem Commun (Camb)       Date:  2001-10-21       Impact factor: 6.222

7.  Generic Darwinian selection in catalytic protocell assemblies.

Authors:  Andreea Munteanu; Camille Stephan-Otto Attolini; Steen Rasmussen; Hans Ziock; Ricard V Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

8.  A self-replicating peptide.

Authors:  D H Lee; J R Granja; J A Martinez; K Severin; M R Ghadiri
Journal:  Nature       Date:  1996-08-08       Impact factor: 49.962

9.  How does a bacterium grow during its cell cycle?

Authors:  I D Burdett; T B Kirkwood
Journal:  J Theor Biol       Date:  1983-07-07       Impact factor: 2.691

10.  Self-replication of complementary nucleotide-based oligomers.

Authors:  D Sievers; G von Kiedrowski
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

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  5 in total

1.  Generic Darwinian selection in catalytic protocell assemblies.

Authors:  Andreea Munteanu; Camille Stephan-Otto Attolini; Steen Rasmussen; Hans Ziock; Ricard V Solé
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

2.  Question 9: prospects for the construction of artificial cells or protocells.

Authors:  Pierre-Alain Monnard; H-J Ziock
Journal:  Orig Life Evol Biosph       Date:  2007-07-07       Impact factor: 1.950

Review 3.  Generating minimal living systems from non-living materials and increasing their evolutionary abilities.

Authors:  Steen Rasmussen; Adi Constantinescu; Carsten Svaneborg
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-08-19       Impact factor: 6.237

Review 4.  From quasispecies to quasispaces: coding and cooperation in chemical and electronic systems.

Authors:  John S McCaskill
Journal:  Eur Biophys J       Date:  2018-03-02       Impact factor: 2.095

5.  Growth and division in a dynamic protocell model.

Authors:  Marco Villani; Alessandro Filisetti; Alex Graudenzi; Chiara Damiani; Timoteo Carletti; Roberto Serra
Journal:  Life (Basel)       Date:  2014-12-03
  5 in total

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