Literature DB >> 17469865

"Tetrahedrality" and the relationship between collective structure and radial distribution functions in liquid water.

P E Mason1, J W Brady.   

Abstract

Molecular dynamics simulations of pure liquid water under ambient conditions using four common empirical water models have been analyzed to determine how well the oxygen-oxygen radial distribution function, g(OO)(r), used as the sole criterion of congruence with experiment, captures variations in the actual anisotropic collective structuring for these models. The largest systematic deviations from tetrahedrality were found to be due to deformations of the angle between the two closet hydrogen bond donor neighbors, but for intrinsic geometric reasons, these were found to contribute less to g(OO)(r) than deformations of the angles between one hydrogen bond donor neighbor and one hydrogen bond acceptor neighbor. Relying exclusively on a qualitative characterization of the second peak in g(OO)(r) seems to overemphasize the differences between the structuring in some of these models.

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Year:  2007        PMID: 17469865     DOI: 10.1021/jp068581n

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Molecular dynamics simulation studies of caffeine aggregation in aqueous solution.

Authors:  Letizia Tavagnacco; Udo Schnupf; Philip E Mason; Marie-Louise Saboungi; Attilio Cesàro; John W Brady
Journal:  J Phys Chem B       Date:  2011-08-30       Impact factor: 2.991

2.  Liquid water is a dynamic polydisperse branched polymer.

Authors:  Saber Naserifar; William A Goddard
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-24       Impact factor: 11.205

3.  Observation of pyridine aggregation in aqueous solution using neutron scattering experiments and MD simulations.

Authors:  Philip E Mason; George W Neilson; Christopher E Dempsey; David L Price; Marie-Louise Saboungi; John W Brady
Journal:  J Phys Chem B       Date:  2010-04-29       Impact factor: 2.991

4.  Understanding how water models affect the anomalous pressure dependence of their diffusion coefficients.

Authors:  Xiaojing Teng; Bailang Liu; Toshiko Ichiye
Journal:  J Chem Phys       Date:  2020-09-14       Impact factor: 3.488

5.  Water Confined in Cylindrical Pores: A Molecular Dynamics Study.

Authors:  Adrien Lerbret; Gérald Lelong; Philip E Mason; Marie-Louise Saboungi; John W Brady
Journal:  Food Biophys       Date:  2011-06-01       Impact factor: 3.114

6.  Water structuring above solutes with planar hydrophobic surfaces.

Authors:  Udo Schnupf; John W Brady
Journal:  Phys Chem Chem Phys       Date:  2017-05-17       Impact factor: 3.676

7.  Preferential interactions of guanidinum ions with aromatic groups over aliphatic groups.

Authors:  Philip E Mason; Christopher E Dempsey; George W Neilson; Steve R Kline; John W Brady
Journal:  J Am Chem Soc       Date:  2009-11-25       Impact factor: 15.419

8.  Molecular dynamics studies of the conformation of sorbitol.

Authors:  A Lerbret; P E Mason; R M Venable; A Cesàro; M-L Saboungi; R W Pastor; J W Brady
Journal:  Carbohydr Res       Date:  2009-08-08       Impact factor: 2.104

9.  Insight into the molecular mechanism of water evaporation via the finite temperature string method.

Authors:  Nicholas Musolino; Bernhardt L Trout
Journal:  J Chem Phys       Date:  2013-04-07       Impact factor: 3.488

  9 in total

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