Literature DB >> 17456599

Following evolution's lead to a single residue switch for diterpene synthase product outcome.

Meimei Xu1, P Ross Wilderman, Reuben J Peters.   

Abstract

There have been few insights into the biochemical origins of natural product biosynthesis from primary metabolism. Of particular interest are terpene synthases, which often mediate the committed step in particular biosynthetic pathways so that alteration of their product outcome is a key step in the derivation of novel natural products. These enzymes also catalyze complex reactions of significant mechanistic interest. Following an evolutionary lead from two recently diverged, functionally distinct diterpene synthase orthologs from different subspecies of rice, we have identified a single residue that can switch product outcome. Specifically, the mutation of a conserved isoleucine to threonine that acts to convert not only the originally targeted isokaurene synthase into a specific pimaradiene synthase but also has a much broader effect, which includes conversion of the ent-kaurene synthases found in all higher plants for gibberellin phytohormone biosynthesis to the production of pimaradiene. This surprisingly facile switch for diterpene synthase catalytic specificity indicates the ease with which primary (gibberellin) metabolism can be subverted to secondary biosynthesis and may underlie the widespread occurrence of pimaradiene-derived natural products. In addition, because this isoleucine is required for the mechanistically more complex cyclization to tetracyclic kaurene, whereas substitution with threonine "short-circuits" this mechanism to produce the "simpler" tricyclic pimaradiene, our results have some implications regarding the means by which terpene synthases specify product outcome.

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Year:  2007        PMID: 17456599      PMCID: PMC1855280          DOI: 10.1073/pnas.0611454104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

Review 1.  Gibberellin signaling: biosynthesis, catabolism, and response pathways.

Authors:  Neil Olszewski; Tai-Ping Sun; Frank Gubler
Journal:  Plant Cell       Date:  2002       Impact factor: 11.277

2.  Bornyl diphosphate synthase: structure and strategy for carbocation manipulation by a terpenoid cyclase.

Authors:  Douglas A Whittington; Mitchell L Wise; Marek Urbansky; Robert M Coates; Rodney B Croteau; David W Christianson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-13       Impact factor: 11.205

3.  Probing the role of the DXDD motif in Class II diterpene cyclases.

Authors:  Sladjana Prisic; Jianjun Xu; Robert M Coates; Reuben J Peters
Journal:  Chembiochem       Date:  2007-05-25       Impact factor: 3.164

4.  Abietadiene synthase catalysis: mutational analysis of a prenyl diphosphate ionization-initiated cyclization and rearrangement.

Authors:  Reuben J Peters; Rodney B Croteau
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

5.  Functional characterization of the rice kaurene synthase-like gene family.

Authors:  Meimei Xu; P Ross Wilderman; Dana Morrone; Jianjun Xu; Arnab Roy; Marcia Margis-Pinheiro; Narayana M Upadhyaya; Robert M Coates; Reuben J Peters
Journal:  Phytochemistry       Date:  2006-12-01       Impact factor: 4.072

6.  Abietadiene synthase from grand fir (Abies grandis): characterization and mechanism of action of the "pseudomature" recombinant enzyme.

Authors:  R J Peters; J E Flory; R Jetter; M M Ravn; H J Lee; R M Coates; R B Croteau
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

7.  Uncovering the complex metabolic network underlying diterpenoid phytoalexin biosynthesis in rice and other cereal crop plants.

Authors:  Reuben J Peters
Journal:  Phytochemistry       Date:  2006-09-07       Impact factor: 4.072

8.  Characterization of a rice gene family encoding type-A diterpene cyclases.

Authors:  Yuri Kanno; Kazuko Otomo; Hiromichi Kenmoku; Wataru Mitsuhashi; Hisakazu Yamane; Hideaki Oikawa; Hiroaki Toshima; Makoto Matsuoka; Takeshi Sassa; Tomonobu Toyomasu
Journal:  Biosci Biotechnol Biochem       Date:  2006-07       Impact factor: 2.043

9.  Engineering a mevalonate pathway in Escherichia coli for production of terpenoids.

Authors:  Vincent J J Martin; Douglas J Pitera; Sydnor T Withers; Jack D Newman; Jay D Keasling
Journal:  Nat Biotechnol       Date:  2003-06-01       Impact factor: 54.908

10.  Identifying and manipulating structural determinates linking catalytic specificities in terpene synthases.

Authors:  Bryan T Greenhagen; Paul E O'Maille; Joseph P Noel; Joe Chappell
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-19       Impact factor: 11.205

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  63 in total

1.  Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates.

Authors:  Ruiqi Huang; Frank Hippauf; Diana Rohrbeck; Maria Haustein; Katrin Wenke; Janie Feike; Noah Sorrelle; Birgit Piechulla; Todd J Barkman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-06       Impact factor: 11.205

2.  Terpene Specialized Metabolism in Arabidopsis thaliana.

Authors:  Dorothea Tholl; Sungbeom Lee
Journal:  Arabidopsis Book       Date:  2011-04-06

Review 3.  Protein engineering towards natural product synthesis and diversification.

Authors:  Angelica O Zabala; Ralph A Cacho; Yi Tang
Journal:  J Ind Microbiol Biotechnol       Date:  2011-10-18       Impact factor: 3.346

Review 4.  Two rings in them all: the labdane-related diterpenoids.

Authors:  Reuben J Peters
Journal:  Nat Prod Rep       Date:  2010-10-01       Impact factor: 13.423

5.  Identification of a fungal 1,8-cineole synthase from Hypoxylon sp. with specificity determinants in common with the plant synthases.

Authors:  Jeffrey J Shaw; Tetyana Berbasova; Tomoaki Sasaki; Kyra Jefferson-George; Daniel J Spakowicz; Brian F Dunican; Carolina E Portero; Alexandra Narváez-Trujillo; Scott A Strobel
Journal:  J Biol Chem       Date:  2015-02-03       Impact factor: 5.157

Review 6.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

7.  Biochemical characterization of the castor bean ent-kaurene synthase(-like) family supports quantum chemical view of diterpene cyclization.

Authors:  Alana J Jackson; David M Hershey; Taylor Chesnut; Meimei Xu; Reuben J Peters
Journal:  Phytochemistry       Date:  2014-05-05       Impact factor: 4.072

Review 8.  Terpenoid synthase structures: a so far incomplete view of complex catalysis.

Authors:  Yang Gao; Richard B Honzatko; Reuben J Peters
Journal:  Nat Prod Rep       Date:  2012-08-21       Impact factor: 13.423

9.  Gene discovery of modular diterpene metabolism in nonmodel systems.

Authors:  Philipp Zerbe; Björn Hamberger; Macaire M S Yuen; Angela Chiang; Harpreet K Sandhu; Lina L Madilao; Anh Nguyen; Britta Hamberger; Søren Spanner Bach; Jörg Bohlmann
Journal:  Plant Physiol       Date:  2013-04-23       Impact factor: 8.340

10.  Identification and characterization of pseudogenes in the rice gene complement.

Authors:  Françoise Thibaud-Nissen; Shu Ouyang; C Robin Buell
Journal:  BMC Genomics       Date:  2009-07-16       Impact factor: 3.969

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