Literature DB >> 16785438

Identifying and manipulating structural determinates linking catalytic specificities in terpene synthases.

Bryan T Greenhagen1, Paul E O'Maille, Joseph P Noel, Joe Chappell.   

Abstract

Terpene synthases are a mechanistically intriguing family of enzymes that catalyze complex, multistep reactions that are capable of generating hundreds of structurally diverse hydrocarbon and oxygenated scaffolds of biological and commercial importance. Interestingly, distantly related terpene synthases from fungi to plants all contain an invariant three-dimensional fold, and molecular comparisons of their active sites indicate that they are enriched with relatively inert amino acid residues that do not react directly with the reaction intermediates. Therefore, catalytic specificity appears to rely on the contour and dynamics of the active site created by the positioning of amino acid backbones and side chains on this catalytic surface and by supporting layers of residues surrounding the synthase active site cavity. Despite the high degree of structural relatedness among terpene synthases, previous studies suggest that no clear relationship between phylogenic organization and catalytic specificities is easily deciphered. We now report on the reciprocal interconversion of catalytic specificities between two distinct yet evolutionarily related terpene synthases based on the systematic identification and mutational replacement of variable residues within and surrounding the active site. Furthermore, we uncover previously undocumented biosynthetic activity during the interconversion, activity that could have been present in a common ancestor of these two highly related synthases. These results provide a simplified means for mapping structural features that are responsible for functional attributes and a strategy for identifying residues that differentiate divergent biosynthetic properties in phylogenetically related terpene synthases.

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Year:  2006        PMID: 16785438      PMCID: PMC1502538          DOI: 10.1073/pnas.0601605103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Evolutionarily conserved networks of residues mediate allosteric communication in proteins.

Authors:  Gürol M Süel; Steve W Lockless; Mark A Wall; Rama Ranganathan
Journal:  Nat Struct Biol       Date:  2003-01

2.  Computational design of a biologically active enzyme.

Authors:  Mary A Dwyer; Loren L Looger; Homme W Hellinga
Journal:  Science       Date:  2004-06-25       Impact factor: 47.728

3.  Gene library synthesis by structure-based combinatorial protein engineering.

Authors:  Paul E O'Maille; Ming-Daw Tsai; Bryan T Greenhagen; Joseph Chappell; Joseph P Noel
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

4.  Identifying functional domains within terpene cyclases using a domain-swapping strategy.

Authors:  K Back; J Chappell
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

5.  Engineering cotton (+)-delta-cadinene synthase to an altered function: germacrene D-4-ol synthase.

Authors:  Yasuo Yoshikuni; Vincent J J Martin; Thomas E Ferrin; Jay D Keasling
Journal:  Chem Biol       Date:  2006-01

6.  Genomic organization of plant terpene synthases and molecular evolutionary implications.

Authors:  S C Trapp; R B Croteau
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

7.  Eremophilane sesquiterpenes from capsidiol.

Authors:  Yuxin Zhao; David J Schenk; Shunji Takahashi; Joe Chappell; Robert M Coates
Journal:  J Org Chem       Date:  2004-10-29       Impact factor: 4.354

8.  An aldol switch discovered in stilbene synthases mediates cyclization specificity of type III polyketide synthases.

Authors:  Michael B Austin; Marianne E Bowman; Jean-Luc Ferrer; Joachim Schröder; Joseph P Noel
Journal:  Chem Biol       Date:  2004-09

9.  The variability of sesquiterpenes emitted from two Zea mays cultivars is controlled by allelic variation of two terpene synthase genes encoding stereoselective multiple product enzymes.

Authors:  Tobias G Köllner; Christiane Schnee; Jonathan Gershenzon; Jörg Degenhardt
Journal:  Plant Cell       Date:  2004-04-09       Impact factor: 11.277

10.  Genomic analysis of the terpenoid synthase ( AtTPS) gene family of Arabidopsis thaliana.

Authors:  S Aubourg; A Lecharny; J Bohlmann
Journal:  Mol Genet Genomics       Date:  2002-06-29       Impact factor: 3.291

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  67 in total

1.  Synthesis of 'cineole cassette' monoterpenes in Nicotiana section Alatae: gene isolation, expression, functional characterization and phylogenetic analysis.

Authors:  Anke Fähnrich; Anne Brosemann; Laura Teske; Madeleine Neumann; Birgit Piechulla
Journal:  Plant Mol Biol       Date:  2012-06-06       Impact factor: 4.076

2.  The primary diterpene synthase products of Picea abies levopimaradiene/abietadiene synthase (PaLAS) are epimers of a thermally unstable diterpenol.

Authors:  Christopher I Keeling; Lina L Madilao; Philipp Zerbe; Harpreet K Dullat; Jörg Bohlmann
Journal:  J Biol Chem       Date:  2011-04-25       Impact factor: 5.157

3.  Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control.

Authors:  Effendi Leonard; Parayil Kumaran Ajikumar; Kelly Thayer; Wen-Hai Xiao; Jeffrey D Mo; Bruce Tidor; Gregory Stephanopoulos; Kristala L J Prather
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

4.  Selectivity of fungal sesquiterpene synthases: role of the active site's H-1 alpha loop in catalysis.

Authors:  Fernando López-Gallego; Grayson T Wawrzyn; Claudia Schmidt-Dannert
Journal:  Appl Environ Microbiol       Date:  2010-10-01       Impact factor: 4.792

5.  Terpene Specialized Metabolism in Arabidopsis thaliana.

Authors:  Dorothea Tholl; Sungbeom Lee
Journal:  Arabidopsis Book       Date:  2011-04-06

Review 6.  Protein engineering towards natural product synthesis and diversification.

Authors:  Angelica O Zabala; Ralph A Cacho; Yi Tang
Journal:  J Ind Microbiol Biotechnol       Date:  2011-10-18       Impact factor: 3.346

Review 7.  Total (bio)synthesis: strategies of nature and of chemists.

Authors:  Alexandra A Roberts; Katherine S Ryan; Bradley S Moore; Tobias A M Gulder
Journal:  Top Curr Chem       Date:  2010

8.  Structural and mechanistic analysis of trichodiene synthase using site-directed mutagenesis: probing the catalytic function of tyrosine-295 and the asparagine-225/serine-229/glutamate-233-Mg2+B motif.

Authors:  L Sangeetha Vedula; Jiaoyang Jiang; Tatiana Zakharian; David E Cane; David W Christianson
Journal:  Arch Biochem Biophys       Date:  2007-10-30       Impact factor: 4.013

Review 9.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

Review 10.  Terpenoid synthase structures: a so far incomplete view of complex catalysis.

Authors:  Yang Gao; Richard B Honzatko; Reuben J Peters
Journal:  Nat Prod Rep       Date:  2012-08-21       Impact factor: 13.423

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