Literature DB >> 17452021

User-centered semantic harmonization: a case study.

Chunhua Weng1, John H Gennari, Douglas B Fridsma.   

Abstract

Semantic interoperability is one of the great challenges in biomedical informatics. Methods such as ontology alignment or use of metadata neither scale nor fundamentally alleviate semantic heterogeneity among information sources. In the context of the Cancer Biomedical Informatics Grid program, the Biomedical Research Integrated Domain Group (BRIDG) has been making an ambitious effort to harmonize existing information models for clinical research from a variety of sources and modeling agreed-upon semantics shared by the technical harmonization committee and the developers of these models. This paper provides some observations on this user-centered semantic harmonization effort and its inherent technical and social challenges. The authors also compare BRIDG with related efforts to achieve semantic interoperability in healthcare, including UMLS, InterMed, the Semantic Web, and the Ontology for Biomedical Investigations initiative. The BRIDG project demonstrates the feasibility of user-centered collaborative domain modeling as an approach to semantic harmonization, but also highlights a number of technology gaps in support of collaborative semantic harmonization that remain to be filled.

Mesh:

Year:  2007        PMID: 17452021     DOI: 10.1016/j.jbi.2007.03.004

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  14 in total

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Journal:  J Biomed Inform       Date:  2010-05-11       Impact factor: 6.317

2.  Electronic Healthcare Record and clinical research in cardiovascular radiology. HL7 CDA and CDISC ODM interoperability.

Authors:  A El Fadly; C Daniel; C Bousquet; T Dart; P-Y Lastic; P Degoulet
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

3.  Development of a reference information model and knowledgebase for electronic bloodstream infection detection.

Authors:  Tara Borlawsky; Bala Hota; Michael Y Lin; Yosef Khan; Jeremy Young; Jennifer Santangelo; Kurt B Stevenson
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

4.  The Primary Care Research Object Model (PCROM): a computable information model for practice-based primary care research.

Authors:  Stuart M Speedie; Adel Taweel; Ida Sim; Theodoros N Arvanitis; Brendan Delaney; Kevin A Peterson
Journal:  J Am Med Inform Assoc       Date:  2008-06-25       Impact factor: 4.497

5.  A comparative analysis of the density of the SNOMED CT conceptual content for semantic harmonization.

Authors:  Zhe He; James Geller; Yan Chen
Journal:  Artif Intell Med       Date:  2015-04-02       Impact factor: 5.326

6.  SMASH: A Data-driven Informatics Method to Assist Experts in Characterizing Semantic Heterogeneity among Data Elements.

Authors:  William Brown; Chunhua Weng; David K Vawdrey; Alex Carballo-Diéguez; Suzanne Bakken
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

7.  Extended Analysis of Topological-Pattern-Based Ontology Enrichment.

Authors:  Zhe He; Vipina Kuttichi Keloth; Yan Chen; James Geller
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2019-01-24

8.  Trend and Network Analysis of Common Eligibility Features for Cancer Trials in ClinicalTrials.gov.

Authors:  Chunhua Weng; Anil Yaman; Kuo Lin; Zhe He
Journal:  Smart Health (2014)       Date:  2014-07

9.  People and organizational issues in research systems implementation.

Authors:  Joan S Ash; Nicholas R Anderson; Peter Tarczy-Hornoch
Journal:  J Am Med Inform Assoc       Date:  2008-02-28       Impact factor: 4.497

10.  BioEMR: an integrative framework for cancer research with multiple genomic technologies.

Authors:  Yu Rang Park; Yun Jung Bae; Ju Han Kim
Journal:  Summit Transl Bioinform       Date:  2008-03-01
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