Literature DB >> 16852394

Evidence for two geminate rebinding states following laser photolysis of R state hemoglobin encapsulated in wet silica gels.

Silvia Sottini, Stefania Abbruzzetti, Cristiano Viappiani, Stefano Bettati, Luca Ronda, Andrea Mozzarelli.   

Abstract

In this letter we report the first experimental evidence for CO rebinding to human hemoglobin from multiple geminate states. The analysis of the rebinding kinetics using a maximum entropy method allowed the identification of two distinct rebinding states within the protein matrix, which become populated under conditions of increased viscosity in a silica gel at high glycerol concentration. Our findings suggest the presence of at least two distinct docking sites for the photolyzed ligand. Assuming a minimal four-state model, we estimate the microscopic rates and the activation energies for the elementary processes.

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Year:  2005        PMID: 16852394     DOI: 10.1021/jp0514224

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Blocking the gate to ligand entry in human hemoglobin.

Authors:  Ivan Birukou; Jayashree Soman; John S Olson
Journal:  J Biol Chem       Date:  2010-12-29       Impact factor: 5.157

Review 2.  Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins.

Authors:  Uri Samuni; David Dantsker; Camille J Roche; Joel M Friedman
Journal:  Gene       Date:  2007-05-10       Impact factor: 3.688

3.  Viscosity-dependent protein dynamics.

Authors:  Ilya J Finkelstein; Aaron M Massari; M D Fayer
Journal:  Biophys J       Date:  2007-05-15       Impact factor: 4.033

4.  Modulating distal cavities in the α and β subunits of human HbA reveals the primary ligand migration pathway.

Authors:  Ivan Birukou; David H Maillett; Anastasiya Birukova; John S Olson
Journal:  Biochemistry       Date:  2011-08-08       Impact factor: 3.162

5.  Structure-function relationship in a variant hemoglobin: a combined computational-experimental approach.

Authors:  Matteo Ceccarelli; Paolo Ruggerone; Roberto Anedda; Antonella Fais; Benedetta Era; Maria Carla Sollaino; Marcella Corda; Mariano Casu
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

6.  Ligand migration through the internal hydrophobic cavities in human neuroglobin.

Authors:  Stefania Abbruzzetti; Serena Faggiano; Stefano Bruno; Francesca Spyrakis; Andrea Mozzarelli; Sylvia Dewilde; Luc Moens; Cristiano Viappiani
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-22       Impact factor: 11.205

7.  Structural Bases for the Regulation of CO Binding in the Archaeal Protoglobin from Methanosarcina acetivorans.

Authors:  Lesley Tilleman; Stefania Abbruzzetti; Chiara Ciaccio; Giampiero De Sanctis; Marco Nardini; Alessandra Pesce; Filip Desmet; Luc Moens; Sabine Van Doorslaer; Stefano Bruno; Martino Bolognesi; Paolo Ascenzi; Massimo Coletta; Cristiano Viappiani; Sylvia Dewilde
Journal:  PLoS One       Date:  2015-06-05       Impact factor: 3.240

8.  CO rebinding kinetics and molecular dynamics simulations highlight dynamic regulation of internal cavities in human cytoglobin.

Authors:  Matteo Gabba; Stefania Abbruzzetti; Francesca Spyrakis; Flavio Forti; Stefano Bruno; Andrea Mozzarelli; F Javier Luque; Cristiano Viappiani; Pietro Cozzini; Marco Nardini; Francesca Germani; Martino Bolognesi; Luc Moens; Sylvia Dewilde
Journal:  PLoS One       Date:  2013-01-04       Impact factor: 3.240

9.  Following ligand migration pathways from picoseconds to milliseconds in type II truncated hemoglobin from Thermobifida fusca.

Authors:  Agnese Marcelli; Stefania Abbruzzetti; Juan Pablo Bustamante; Alessandro Feis; Alessandra Bonamore; Alberto Boffi; Cristina Gellini; Pier Remigio Salvi; Dario A Estrin; Stefano Bruno; Cristiano Viappiani; Paolo Foggi
Journal:  PLoS One       Date:  2012-07-06       Impact factor: 3.240

  9 in total

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