Literature DB >> 17434659

Destabilised mutants of ubiquitin gain equal stability in crowded solutions.

Andrew Roberts1, Sophie E Jackson.   

Abstract

This paper investigates the thermodynamic and kinetic response of WT* ubiquitin (F45W) and three mutants to high concentrations of glucose, sucrose and dextran under physiological temperature and pH. WT* ubiquitin was stabilised by the same amount when comparing each cosolute on a weight to volume ratio, with cosolute effects largely independent of denaturant concentration. The energy difference between the mutants and WT* ubiquitin also remained the same in high concentrations of cosolute. An apparent decrease in transition-state surface burial in the presence of the cosolutes was attributed to increased compaction of the denatured state, and not to the Hammond effect. Together, these results suggest higher thermodynamic stabilities and folding rates for proteins in vivo compared to in vitro, in addition to more compact denatured states. Because the effects of mutation are the same in dilute solution and crowded conditions used to mimic the cellular environment, there is validity in using measurements of mutant stabilities made in dilute solutions to inform on how the mutations may affect stability in vivo.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17434659     DOI: 10.1016/j.bpc.2007.03.011

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  12 in total

1.  Generalized fundamental measure theory for atomistic modeling of macromolecular crowding.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-26

2.  Discrete molecular dynamics: an efficient and versatile simulation method for fine protein characterization.

Authors:  David Shirvanyants; Feng Ding; Douglas Tsao; Srinivas Ramachandran; Nikolay V Dokholyan
Journal:  J Phys Chem B       Date:  2012-02-10       Impact factor: 2.991

3.  Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences.

Authors:  Jyotica Batra; Ke Xu; Sanbo Qin; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2009-08-05       Impact factor: 4.033

4.  Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

5.  Effect of mixed macromolecular crowding agents on protein folding.

Authors:  Huan-Xiang Zhou
Journal:  Proteins       Date:  2008-09

6.  Power-law dependence of the melting temperature of ubiquitin on the volume fraction of macromolecular crowders.

Authors:  Matthias M Waegele; Feng Gai
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

Review 7.  Protein folding, binding, and droplet formation in cell-like conditions.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Curr Opin Struct Biol       Date:  2016-10-20       Impact factor: 6.809

8.  Simulation and Modeling of Crowding Effects on the Thermodynamic and Kinetic Properties of Proteins with Atomic Details.

Authors:  Huan-Xiang Zhou; Sanbo Qin
Journal:  Biophys Rev       Date:  2013-06-01

9.  Polymer crowders and protein crowders act similarly on protein folding stability.

Authors:  Huan-Xiang Zhou
Journal:  FEBS Lett       Date:  2013-01-23       Impact factor: 4.124

10.  Nonadditive effects of mixed crowding on protein stability.

Authors:  Jyotica Batra; Ke Xu; Huan-Xiang Zhou
Journal:  Proteins       Date:  2009-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.