Literature DB >> 17426035

NMR investigation of Tyr105 mutants in TEM-1 beta-lactamase: dynamics are correlated with function.

Nicolas Doucet1, Pierre-Yves Savard, Joelle N Pelletier, Stéphane M Gagné.   

Abstract

The existence of coupled residue motions on various time scales in enzymes is now well accepted, and their detailed characterization has become an essential element in understanding the role of dynamics in catalysis. To this day, a handful of enzyme systems has been shown to rely on essential residue motions for catalysis, but the generality of such phenomena remains to be elucidated. Using NMR spectroscopy, we investigated the electronic and dynamic effects of several mutations at position 105 in TEM-1 beta-lactamase, an enzyme responsible for antibiotic resistance. Even in absence of substrate, our results show that the number and magnitude of short and long range effects on (1)H-(15)N chemical shifts are correlated with the catalytic efficiencies of the various Y105X mutants investigated. In addition, (15)N relaxation experiments on mutant Y105D show that several active-site residues of TEM-1 display significantly altered motions on both picosecond-nanosecond and microsecond-millisecond time scales despite many being far away from the site of mutation. The altered motions among various active-site residues in mutant Y105D may account for the observed decrease in catalytic efficiency, therefore suggesting that short and long range residue motions could play an important catalytic role in TEM-1 beta-lactamase. These results support previous observations suggesting that internal motions play a role in promoting protein function.

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Year:  2007        PMID: 17426035     DOI: 10.1074/jbc.M609777200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  22 in total

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2.  β-Lactamase of Mycobacterium tuberculosis Shows Dynamics in the Active Site That Increase upon Inhibitor Binding.

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3.  TEM-1 backbone dynamics-insights from combined molecular dynamics and nuclear magnetic resonance.

Authors:  Olivier Fisette; Sébastien Morin; Pierre-Yves Savard; Patrick Lagüe; Stéphane M Gagné
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

4.  Influence of substrates and inhibitors on the structure of Klebsiella pneumoniae carbapenemase-2.

Authors:  Ben A Shurina; Richard C Page
Journal:  Exp Biol Med (Maywood)       Date:  2019-06-04

5.  Molecular dynamics of class A β-lactamases-effects of substrate binding.

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Journal:  Biophys J       Date:  2012-10-16       Impact factor: 4.033

6.  Allosteric Mechanisms of Nonadditive Substituent Contributions to Protein-Ligand Binding.

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7.  Network of long-range concerted chemical shift displacements upon ligand binding to human angiogenin.

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8.  Mechanism of proton transfer in class A β-lactamase catalysis and inhibition by avibactam.

Authors:  Orville A Pemberton; Radwan E Noor; Vasantha Kumar M V; Ruslan Sanishvili; M Trent Kemp; Fiona L Kearns; H Lee Woodcock; Ioannis Gelis; Yu Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-02       Impact factor: 11.205

9.  Substitutions at position 105 in SHV family β-lactamases decrease catalytic efficiency and cause inhibitor resistance.

Authors:  Mei Li; Benjamin C Conklin; Magdalena A Taracila; Rebecca A Hutton; Marion J Skalweit
Journal:  Antimicrob Agents Chemother       Date:  2012-08-20       Impact factor: 5.191

10.  Biochemical evidence for the tyrosine involvement in cationic intermediate stabilization in mouse beta-carotene 15, 15'-monooxygenase.

Authors:  Eugenia Poliakov; Susan Gentleman; Preethi Chander; Francis X Cunningham; Bella L Grigorenko; Alexander V Nemuhin; T Michael Redmond
Journal:  BMC Biochem       Date:  2009-12-14       Impact factor: 4.059

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